Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38800 133 / 1e-32 Plant calmodulin-binding protein-related (.1) AT3G54570 98 / 2e-21 Plant calmodulin-binding protein-related (.1) AT5G04020 87 / 2e-17 calmodulin binding (.1) AT5G39380 46 / 7e-05 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024175 [exp] 1020 / 0 AT3G54570 119 / 6e-28 Plant calmodulin-binding protein-related (.1) Lus10035417 [exp] 89 / 6e-18 AT5G04020 129 / 3e-30 calmodulin binding (.1) Lus10031023 [exp] 83 / 5e-16 AT5G04020 127 / 9e-30 calmodulin binding (.1) Lus10034717 [exp] 44 / 0.0002 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 44 / 0.0005 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1) Lus10030701 [exp] 44 / 0.0006 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024100 [exp] 156 / 2e-39 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1) Potri.003G201400 [exp] 146 / 2e-36 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1) Potri.006G043900 [exp] 107 / 1e-23 AT5G04020 145 / 6e-35 calmodulin binding (.1) Potri.016G041100 [exp] 98 / 9e-21 AT5G04020 114 / 4e-25 calmodulin binding (.1) Potri.015G049600 [exp] 46 / 8e-05 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [flax] [poplar] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039544 pacid=23165270 polypeptide=Lus10039544 locus=Lus10039544.g ID=Lus10039544.BGIv1.0 annot-version=v1.0 ATGGTTCAAAGCAGCAAGCTTGGGATAATCCCAATCCAATCTCATCATCATCATCCTCCTCCACAAAACCTGAAGATCAAGAATCCAACTCCTGGATATC ATCATCAGCTTCATGGGCTTCCTCCAGAACTGACTAAGAAAATGAAACGATCCGGTTCTGCCAAGAAAGCTTCAGACTTCCACAAGATATCACAAAACCA GAGGAAACCCACGTCTGTGGCGACTTATGCTCCTCCGCCTTCCACTCCACAGAAGTCGCCGCCGAATTACATGAAGTCCACCACCAGCTCAGATGCCAGG AAGGACAAGGAGCGTTCCCCTGTAAGCAAGTCCTTTAATCTAGATAGAAAACATACTATCAATTCTGCTTCTTCCCATGCTTCTTCTTCTTCCGGTAAAC GCAAGCCGTCGGCGGCGGTGGGGGATGAAGGGAGGAGTGCGGCGTTGAAGAAGAAGAAGACAATGGCAAGAGCTCTGACCAAAGTTCCGAGCTTTAAAAA GTGTTCTTCGAAAGTGGGTCCCAAGAACGCGATGAGATCGACCTGCTCTTCAACCATGAAGGATTCCAAGTTCCCTTCTTACCTTGTGCTTGACCATGGA GCTACAGAAGCTCAAGGTACTTCGGCTATGAAGGTGTGTCCCTACACTTACTGCTCTCTGAATGGCCATCACCACCGTCAGCCTGATCTCCCGCCGTTGA AATGCTTCTTGAAATCCAAGCGCCGGTCCCTCAAGGCCCAGAAAAGTGTCAAGTTGGGAGGTTCTCTGTCTCCCAGGAGCAGACCAGTTGCCGGTGAAAT TGTGGGGGTTTCTGATGTTGATCAAGCGGATTTCTTTGTTGAATTTTTCACAAAAGAGGAAGATAATCATGATAATGATGCTCCGACAATGGAAGATGTG AAGCTTGTTGAAGAACAGAACCCGTTGGATGAAATTTCTGGCTCGGAGAGTGAATTTGAGCGAGACAACATGAACCGGTTTGGGGAAATGAGTAGCTCTG CTGATGAAATGGTTGAGATCAGTAGCTTTGATGGTGGAATTGAAGATGGAAGTGTGGAGGAAGATGATGAGGGAGACGACCAGAGTTCTGAAGAAGGTAC AGAAATGGAGTGGGTACAAGGCCTGGATTCTTCATCTTCTCAAGTTGATGTAGAAGGTGAGCAGTTATTGGAGTTTGAGAAGCATGAGATGGTCAAATCA AATGACATTGCCAGCAGCAGCTGTACTGAAGAGGTTCTCACAAAGGAGTTGCTTCGTGATCTGTTTGAGGAAGAAACTGAAGCTGCTACTTCTTCTGCAA CAAGTGAAATTGGTGTTAATGATGGATTTCAGAATAGTGCTGATGATGCATTTCAGAAGCTGGAAGAAGAAAAAGGCACTGATGGCGAGACATGTTCAGT GTCAAAGTTAGGTCAGGCGGATTGCGTTGCTGATATTGAAGTGTTCAGCGCGGAGGTTAATGAGATCTTCGAGGTGGATGTCGACTCGAGTGAGTACATT GTCAAGGAAGGTGATGACATGGTTGAGCCTGGAAATGTTATTGACACACAAACTTCAGAATATCAAGACAAGAGCAGGACTCGAAATGTCATGAATCCTG ATGCAGAAAAGCATTGCAGCAGCGACTGGAAATGGAAGATAGGGTCCAGGAGAGGAATGGAGGAGACTGAAGGAAATGAGAGGGAGTTCAATCCTAAAGA TCCAAACTTTCTTCCTGTGGTAGCTGACCCAGAGGGGGAGAAAGTTGATCTGAAGCATCAGATGATGGATGAAAGAAGGAACTCAGAGGAATGGATGATT GATCATGCCCTACAGCAAACTGTCACCAAGCTAGCTTCAGCTAGGAAAAGGAAAGTTGCATTACTTGTTGAAGCTTTCGAAACAGTATCTCCTAGTACTT TACCCAAAATCGATCCTCGTATAATCAGGCATCCAGCATCCCCCATTTTCTCTCCCACTTCCAAGCAGATTCAGGCTTGTGGTTGA
AA sequence Show only first row Show all	>Lus10039544 pacid=23165270 polypeptide=Lus10039544 locus=Lus10039544.g ID=Lus10039544.BGIv1.0 annot-version=v1.0 MVQSSKLGIIPIQSHHHHPPPQNLKIKNPTPGYHHQLHGLPPELTKKMKRSGSAKKASDFHKISQNQRKPTSVATYAPPPSTPQKSPPNYMKSTTSSDAR KDKERSPVSKSFNLDRKHTINSASSHASSSSGKRKPSAAVGDEGRSAALKKKKTMARALTKVPSFKKCSSKVGPKNAMRSTCSSTMKDSKFPSYLVLDHG ATEAQGTSAMKVCPYTYCSLNGHHHRQPDLPPLKCFLKSKRRSLKAQKSVKLGGSLSPRSRPVAGEIVGVSDVDQADFFVEFFTKEEDNHDNDAPTMEDV KLVEEQNPLDEISGSESEFERDNMNRFGEMSSSADEMVEISSFDGGIEDGSVEEDDEGDDQSSEEGTEMEWVQGLDSSSSQVDVEGEQLLEFEKHEMVKS NDIASSSCTEEVLTKELLRDLFEEETEAATSSATSEIGVNDGFQNSADDAFQKLEEEKGTDGETCSVSKLGQADCVADIEVFSAEVNEIFEVDVDSSEYI VKEGDDMVEPGNVIDTQTSEYQDKSRTRNVMNPDAEKHCSSDWKWKIGSRRGMEETEGNEREFNPKDPNFLPVVADPEGEKVDLKHQMMDERRNSEEWMI DHALQQTVTKLASARKRKVALLVEAFETVSPSTLPKIDPRIIRHPASPIFSPTSKQIQACG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54570			Plant calmodulin-binding prote...		Lus10039544 [exp]	0	1
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	2.8	0.8036
AT2G33580			Protein kinase superfamily pro...		Lus10022490 [exp]	3.3	0.7373
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	4.6	0.7535
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Lus10037191 [exp]	5.7	0.7645
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	8.8	0.7665
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	9.3	0.7803
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	13.0	0.7450
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	13.4	0.7614
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	20.8	0.6929
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10032897 [exp]	23.9	0.7587

Compare expression of checked genes

Lus10039544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.