Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16295 55 / 5e-10 SPH1 S-protein homologue 1 (.1) AT4G29035 55 / 6e-10 Plant self-incompatibility protein S1 family (.1) AT2G06090 49 / 1e-07 Plant self-incompatibility protein S1 family (.1) AT3G26880 47 / 3e-07 Plant self-incompatibility protein S1 family (.1) AT3G55677 47 / 1e-06 Plant self-incompatibility protein S1 family (.1) AT1G26799 46 / 1e-06 Plant self-incompatibility protein S1 family (.1) AT5G04350 45 / 2e-06 Plant self-incompatibility protein S1 family (.1) AT3G27680 45 / 3e-06 Plant self-incompatibility protein S1 family (.1) AT5G06030 45 / 4e-06 Plant self-incompatibility protein S1 family (.1) AT3G26870 44 / 5e-06 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019779 [exp] 184 / 8e-60 AT4G16295 58 / 6e-11 S-protein homologue 1 (.1) Lus10016351 [exp] 178 / 1e-57 AT4G16295 57 / 1e-10 S-protein homologue 1 (.1) Lus10016350 [exp] 119 / 7e-35 AT2G06090 59 / 1e-11 Plant self-incompatibility protein S1 family (.1) Lus10000683 [exp] 94 / 8e-25 AT4G16295 57 / 5e-11 S-protein homologue 1 (.1) Lus10000682 [exp] 94 / 1e-24 AT4G16295 56 / 4e-10 S-protein homologue 1 (.1) Lus10021634 [exp] 92 / 3e-24 AT4G29035 58 / 4e-11 Plant self-incompatibility protein S1 family (.1) Lus10021633 [exp] 89 / 5e-23 AT4G29035 57 / 4e-11 Plant self-incompatibility protein S1 family (.1) Lus10011897 [exp] 84 / 4e-21 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10022826 [exp] 84 / 5e-21 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 76 / 6e-18 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 72 / 3e-16 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.010G008300 [exp] 59 / 1e-11 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 57 / 2e-10 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.003G201300 [exp] 48 / 3e-07 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 44 / 5e-06 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.003G175100 [exp] 44 / 7e-06 ND / Potri.018G148700 [exp] 39 / 0.0004 AT1G04645 88 / 5e-23 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10039546 pacid=23164997 polypeptide=Lus10039546 locus=Lus10039546.g ID=Lus10039546.BGIv1.0 annot-version=v1.0 ATGAAGACCCCCATCAGTACCACCACCATCGCCGCCGTACTTAGCTTCGTTTTCCTAGCGGCGACAACAACAACTTCATCGGCGTTCAACTTGAGGGCAC CGCTCCGACAATACAAGCAAGTTCACGTCCTCAACGAGATGACCAACGACAAGCTCCTCCACGTGCACTGCCACTCTAGGGAAAGCGACATGGGCATCCG TGACGTGGCTGTGGGGGCGGAGTACACGTGGAGGTTCAGGCCCGGCCCTATAGGGACAACTAGGTGGACGTGTGATGCCACGACCGAAGACCAGCGTCGT GTGACCTTCTACTCGTACTGGGAGGACGTGGCACAGCCGAGAAGAGAGTACTTGGGGAACACCTATTGGGTTGCTCAGGAGGAAGGAATTTACCTTAGAC CCATACAAGGTACCAGAGACCAAATCTATGCCACGTGGGTGCCGATTGCCAGCCCTCCTCCTCCGTCCCCCGTGGCTCCACCACATGCATACTGA
AA sequence Show only first row Show all	>Lus10039546 pacid=23164997 polypeptide=Lus10039546 locus=Lus10039546.g ID=Lus10039546.BGIv1.0 annot-version=v1.0 MKTPISTTTIAAVLSFVFLAATTTTSSAFNLRAPLRQYKQVHVLNEMTNDKLLHVHCHSRESDMGIRDVAVGAEYTWRFRPGPIGTTRWTCDATTEDQRR VTFYSYWEDVAQPRREYLGNTYWVAQEEGIYLRPIQGTRDQIYATWVPIASPPPPSPVAPPHAY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10039546 [exp]	0	1
					Lus10039384 [exp]	2.0	0.8737
					Lus10020692 [exp]	3.5	0.8240
					Lus10014629 [exp]	5.7	0.8470
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	8.9	0.8083
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	10.0	0.8083
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	11.0	0.8083
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	11.8	0.8083
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10037137 [exp]	12.2	0.8014
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	12.6	0.8083
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	13.4	0.8029

Compare expression of checked genes

Lus10039546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.