Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38760 270 / 8e-90 ANN3, ANNAT3 annexin 3 (.1) AT1G35720 208 / 1e-65 ATOXY5, ANNAT1 annexin 1 (.1) AT5G10230 204 / 8e-64 ANN7, ANNAT7 annexin 7 (.1) AT5G10220 194 / 6e-60 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G65020 194 / 6e-60 ANNAT2 annexin 2 (.1.2) AT5G12380 181 / 5e-55 ANNAT8 annexin 8 (.1) AT1G68090 151 / 1e-43 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 117 / 1e-30 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024174 [exp] 494 / 4e-178 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024172 [exp] 348 / 4e-120 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 322 / 1e-109 AT2G38760 323 / 2e-109 annexin 3 (.1) Lus10003611 [exp] 201 / 1e-62 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10008227 [exp] 201 / 1e-62 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10036470 [exp] 186 / 7e-57 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10041140 [exp] 185 / 1e-56 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10024054 [exp] 173 / 7e-52 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10019780 [exp] 162 / 2e-47 AT5G12380 372 / 1e-129 annexin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024800 [exp] 330 / 3e-113 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.007G092500 [exp] 203 / 1e-63 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.002G095600 [exp] 200 / 2e-62 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.005G075900 [exp] 186 / 8e-57 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.001G277500 [exp] 182 / 1e-55 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.003G200700 [exp] 178 / 6e-54 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.015G031800 [exp] 153 / 3e-44 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.012G041900 [exp] 151 / 2e-43 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 145 / 4e-41 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.010G101800 [exp] 138 / 8e-38 AT1G68090 343 / 3e-117 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10039547 pacid=23165306 polypeptide=Lus10039547 locus=Lus10039547.g ID=Lus10039547.BGIv1.0 annot-version=v1.0 ATGGCCACACTAAGAGTATCGGATGTCGTTCCTTCTGCAACCCAAAATAGTGAACGACTCAGAAAGGCTTTCAAAGGAGTAGGGACTGATGAGAAGGCAC CCATATGGATCTTAGGACACAGAAATGCATCCCAGAGGAGGATGATTAGAGACACTTACCACCAGATTTACAAAGAAACCCTTATCGATCGCCTCCATTT AGAGCTCTCCCGAAATTTCAGAAGAGCAATGATTCTATGGACATATGATCCGGCAGAGAGGGATGCAGTGCTGGCCAACAAAGCCTTCACGGGAAAGAAG CAAGGATTCAAGCAGCTTCAATCTATAGTTGAGATTGCATGCGCCACTTCCCCTCATCATCTGCAATTGGTGAAGCACACTTACTGTACCCTTTTTTATT CTTCGCTTGAAGAGGATATTGCTGTCCACATCTCCTTCCCCATCAAAAAGCTTCTCGTGGGTTTGGTGTCGTACAGGTATGACAAAGAACTGGTGGGTAT GAACTTGCAAACATGGAAGCATCCAAATTACACGAAGCCATCAAGACAAAACATACTAGGAATGTGCACCAGCTCAGAACAACTTTCGAGCTGTATAAGC AGCGTTTCGGGAATTCTATCGACTCTGAAGGACTATGGAGAGGGTGATATGGAGAGCCTTTTAAGCGCAGTGGTTCAGTGCATTCATTGCCCTGCAAAAC ACTTTGCTGAGGTCATCAAAACATCTGTTAATGGGCTTGGAACCGACGAAAAATCCTTGACTAGGGCGATAGTGACTCGAGCTGAGATTGATCTGCTGAA AATCAGAGAAGAGTATACTAACCTGTATGGAACCCAGGTGGAGGATGCTATCACCGGAGATACTTCAGAGGACTATAAAAATTTGTTGAAGACTTTACTT GGTGCCAGATTTTGA
AA sequence Show only first row Show all	>Lus10039547 pacid=23165306 polypeptide=Lus10039547 locus=Lus10039547.g ID=Lus10039547.BGIv1.0 annot-version=v1.0 MATLRVSDVVPSATQNSERLRKAFKGVGTDEKAPIWILGHRNASQRRMIRDTYHQIYKETLIDRLHLELSRNFRRAMILWTYDPAERDAVLANKAFTGKK QGFKQLQSIVEIACATSPHHLQLVKHTYCTLFYSSLEEDIAVHISFPIKKLLVGLVSYRYDKELVGMNLQTWKHPNYTKPSRQNILGMCTSSEQLSSCIS SVSGILSTLKDYGEGDMESLLSAVVQCIHCPAKHFAEVIKTSVNGLGTDEKSLTRAIVTRAEIDLLKIREEYTNLYGTQVEDAITGDTSEDYKNLLKTLL GARF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	0	1
AT1G08350			Endomembrane protein 70 protei...		Lus10004873 [exp]	5.8	0.6994
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	10.7	0.7022
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	11.2	0.6921
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	11.8	0.6944
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	14.5	0.6519
AT5G28910			unknown protein		Lus10008196 [exp]	14.7	0.6700
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	17.7	0.6174
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	18.6	0.6976
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	20.0	0.6621
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	21.5	0.6422

Compare expression of checked genes

Lus10039547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.