Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 164 / 5e-44 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 150 / 2e-39 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G58807 43 / 0.0004 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 738 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 312 / 1e-95 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 302 / 2e-92 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 298 / 3e-91 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 279 / 5e-84 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002737 [exp] 193 / 4e-56 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 151 / 2e-39 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 142 / 1e-36 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 119 / 1e-28 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029300 [exp] 295 / 5e-90 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 291 / 5e-88 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 291 / 5e-88 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 280 / 1e-84 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 279 / 5e-84 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 276 / 1e-82 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015200 [exp] 275 / 3e-82 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 274 / 3e-82 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015300 [exp] 265 / 5e-79 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 264 / 1e-78 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039548 pacid=23165172 polypeptide=Lus10039548 locus=Lus10039548.g ID=Lus10039548.BGIv1.0 annot-version=v1.0 ATGCCATCACAGATGGGTAAACTGTCAAATTTCCGCAAGTTAACTGACTTCTATATTGGAAGAGGAAGTGGGTCTGCAATCAAGGAGTTGGGGCAGCTTC ATCATCTTCATGGATCACTTACCATAAGGAATCTTCAGTTTCTTGGTAATCTCCAAGATGTTTGTCTGGCTAATTTGAAAGGAAAGAAGTGCCTTGAGTC GCTAAAGCTTATATGGAAAGGCGAGACATATGATTCGTTACAGGGAAGAGCTATGTTGGAGAAGCTGCAACCAAATAAGAACTTGGGATGTCTTTCCATC ATTGGTTATGGAGGAACAAAGTTCCCATATTGGCTAGGAGACTCCATTTTCTCAATCATAACATCTGTTGAACTGAGGGATTGTAAGCACTGCTCCACCT TACCACCACTAGGGCAATTAGTATCCTTAACGAGCTTCTCAATTGTCGCATGTGATGCAGTGGTGACGGTTGGATCTGAGTTCTATGGCAGCTCGCCTAC GAGACAGGTTCCATTTTCATCTCTGAAATCTCTACAATTCGAAAAGTTGCAACAATGGCAGGAGTGGAATGTTGCAACTGATGGAAATGACATTGGAGCT TTCCCTGTCATCGAACAGCTTTACGTAAAAGATTGTCCCAACCTCACTAAAGGACTGCCCAGAAAGCTCCCATACTTGGAAACACTAGTTATAGAGGGGT GCCAGCAGCTAAACATGGCTACAACTCCAAGTGATCAAGCCACCTACAACATGCATTTAGTGGACGAATACTGGGAAGTGTGGCTGAACAGATTTGCTGC TGTTAGGCCGCACCACCTTGAAATTGCTCGATTTTTCAGTCGTTCACCTCTTGAAGGGATGGAGCTGGTAACTGGCATTTCCTCTTCTTTAGAAGAAATC GAGATTTGTAGATCTGACTTACTTGAGTACTTTCCACTGCATATGTTTCCTAAACTGAAGACCCTCTCTATCTGTTACTCTGCCAGTCTGAAGCACCTTT CAGAACCTGTAGACAGCACAATTTGTTGGGAAGCCAGTTTTCTCGACTCCTTGGAAGTTTGCAACTGTCCAAATTTGGTTTCATTTCCTAGGGGTGGACT AACTGCCCCAAAAATGACACAACTACTATTGCAAAGTTGCTCCAAGTTGAAGTCACTTCCTGAAAGGATGCACTCATTGATCCCTTCTCTTGTGCTGCTA AAATATCTGACTGTCTAG
AA sequence Show only first row Show all	>Lus10039548 pacid=23165172 polypeptide=Lus10039548 locus=Lus10039548.g ID=Lus10039548.BGIv1.0 annot-version=v1.0 MPSQMGKLSNFRKLTDFYIGRGSGSAIKELGQLHHLHGSLTIRNLQFLGNLQDVCLANLKGKKCLESLKLIWKGETYDSLQGRAMLEKLQPNKNLGCLSI IGYGGTKFPYWLGDSIFSIITSVELRDCKHCSTLPPLGQLVSLTSFSIVACDAVVTVGSEFYGSSPTRQVPFSSLKSLQFEKLQQWQEWNVATDGNDIGA FPVIEQLYVKDCPNLTKGLPRKLPYLETLVIEGCQQLNMATTPSDQATYNMHLVDEYWEVWLNRFAAVRPHHLEIARFFSRSPLEGMELVTGISSSLEEI EICRSDLLEYFPLHMFPKLKTLSICYSASLKHLSEPVDSTICWEASFLDSLEVCNCPNLVSFPRGGLTAPKMTQLLLQSCSKLKSLPERMHSLIPSLVLL KYLTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	0	1
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	1.4	0.8917
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10018779 [exp]	6.5	0.8881
AT3G27340			unknown protein		Lus10022323 [exp]	7.4	0.8780
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10023104 [exp]	8.4	0.8564
AT3G62940			Cysteine proteinases superfami...		Lus10040897 [exp]	14.7	0.8610
					Lus10029247 [exp]	16.9	0.8292
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016955 [exp]	17.5	0.8799
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10017003 [exp]	20.8	0.8436
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010764 [exp]	21.0	0.8751
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	22.3	0.8753

Compare expression of checked genes

Lus10039548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.