Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38760 313 / 8e-106 ANN3, ANNAT3 annexin 3 (.1) AT5G65020 228 / 1e-72 ANNAT2 annexin 2 (.1.2) AT5G12380 228 / 3e-72 ANNAT8 annexin 8 (.1) AT5G10230 227 / 4e-72 ANN7, ANNAT7 annexin 7 (.1) AT5G10220 220 / 2e-69 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT1G35720 220 / 3e-69 ATOXY5, ANNAT1 annexin 1 (.1) AT1G68090 159 / 6e-46 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 147 / 2e-41 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024172 [exp] 578 / 0 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10024174 [exp] 406 / 2e-142 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10039547 [exp] 307 / 2e-103 AT2G38760 271 / 4e-90 annexin 3 (.1) Lus10008227 [exp] 228 / 2e-72 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 228 / 2e-72 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10024054 [exp] 216 / 6e-68 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 210 / 3e-65 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10041140 [exp] 208 / 2e-64 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10019780 [exp] 207 / 2e-64 AT5G12380 372 / 1e-129 annexin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024800 [exp] 374 / 1e-129 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.007G092500 [exp] 239 / 5e-77 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.003G200700 [exp] 230 / 2e-73 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.005G075900 [exp] 226 / 1e-71 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.002G095600 [exp] 226 / 2e-71 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.001G277500 [exp] 224 / 7e-71 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.012G041900 [exp] 178 / 5e-53 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 176 / 2e-52 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.001G024900 [exp] 164 / 8e-48 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.008G139500 [exp] 151 / 7e-43 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10039550 pacid=23165381 polypeptide=Lus10039550 locus=Lus10039550.g ID=Lus10039550.BGIv1.0 annot-version=v1.0 ATGGCGACTCTCATTATCGCTGATGTTGTTCCTTCTCCAGCCCAAGACAGTCAGAATCTCATGAAGGCTTGCAAAGGTCTTTTCCTTCCTTCCTTACGCA TATGGCTATGTCTGATTTCTAAAAAGCTTGAATCTTTGAATCGTAATCTGGCGATTTCGTTCTGGGTTAGCTGGAATGTTGAATGTTTATGGATTGATGT GGTTGTAGGACTAGGAACAGACGAGAAGGCAATCATATTGATCTTAGGACACAGAAATTCAACCCAAAGGAGGGAAATCAGGGACACTTATCAGCAGCTT TACGAAGAATCCCTTGTCGATCGTCTCCGTTCGGAACTCTCCCGAGATTTCGGAAGAGCGATAATTATGTGGACATATGATCCTGCTGAGAGAGACGCTA TTCTGGCAAATGAAGCACTGAAAGGAGGAAAGAAGCTTGGTGTGAAACAGCTGCAAGTGATAGTAGAGATAGCCTGCTCTATTTCTCCTCACCATCTTCA GTCTGTGAAACAAGCTTATTCTGCTCTCTTTGACTCCTCCCTGGAGGAAGCCATTGCTGCTGTTGTCTCCTTACCCCTCCGAAAGGTGTTGGTGGGATTG GTGAGATCGTACAGGTATGACAAGGAGGTGGTGGATATGAATATTGCACAATCGGAGGCATCCAAGTTATATGAAGCCATTGAATTGAAGAAACTAGATG ACGATGATGTGCTTTACATTCTCACCACTAGGAATGTTTATCAGCTCAAAGCTATGTTCGAGTTGTATGAGCAGCTCTCTGGGAACCCTATCCATCAGGA TCTGAAGGGCTATGGAGAAGGTGATTTTGAGTCCCTTTTGGGGATAGCAACTCAGTGCATGGTGTCCCCAGAGAAGCACTTTGCTGAGGTTATAAGAAGG TCGATCGTGGGACTGGGGACGGACGAAGATTCGCTGACAAGGGCGATAGTTGGTAGAGCAGAGGTTGACTTGGGGAAGGTGAGAGCAGAGTACTCAAACA TGTTTGGAAAGAAGCTGGAGGATGATGTAATTGGAGATACTTCAGGGGACTACAAAGACACTTTGTTGACTTTACTTGGTGCAACAATCTGA
AA sequence Show only first row Show all	>Lus10039550 pacid=23165381 polypeptide=Lus10039550 locus=Lus10039550.g ID=Lus10039550.BGIv1.0 annot-version=v1.0 MATLIIADVVPSPAQDSQNLMKACKGLFLPSLRIWLCLISKKLESLNRNLAISFWVSWNVECLWIDVVVGLGTDEKAIILILGHRNSTQRREIRDTYQQL YEESLVDRLRSELSRDFGRAIIMWTYDPAERDAILANEALKGGKKLGVKQLQVIVEIACSISPHHLQSVKQAYSALFDSSLEEAIAAVVSLPLRKVLVGL VRSYRYDKEVVDMNIAQSEASKLYEAIELKKLDDDDVLYILTTRNVYQLKAMFELYEQLSGNPIHQDLKGYGEGDFESLLGIATQCMVSPEKHFAEVIRR SIVGLGTDEDSLTRAIVGRAEVDLGKVRAEYSNMFGKKLEDDVIGDTSGDYKDTLLTLLGATI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	0	1
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	2.4	0.9140
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	2.6	0.9195
					Lus10005391 [exp]	2.8	0.8990
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	3.5	0.9065
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	4.2	0.9156
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	5.3	0.9117
					Lus10041677 [exp]	6.0	0.8873
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	7.4	0.9088
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	8.4	0.9024
					Lus10017966 [exp]	10.4	0.8962

Compare expression of checked genes

Lus10039550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.