Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38750 301 / 7e-102 ANNAT4 annexin 4 (.1) AT1G35720 155 / 3e-45 ATOXY5, ANNAT1 annexin 1 (.1) AT5G10230 145 / 2e-41 ANN7, ANNAT7 annexin 7 (.1) AT5G65020 145 / 3e-41 ANNAT2 annexin 2 (.1.2) AT5G12380 138 / 1e-38 ANNAT8 annexin 8 (.1) AT5G10220 135 / 2e-37 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT2G38760 120 / 1e-31 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 100 / 2e-24 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024171 [exp] 555 / 0 AT2G38750 318 / 1e-108 annexin 4 (.1) Lus10008227 [exp] 155 / 6e-45 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10019780 [exp] 154 / 9e-45 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10003611 [exp] 154 / 2e-44 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041140 [exp] 145 / 4e-41 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 143 / 2e-40 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10024054 [exp] 142 / 4e-40 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 138 / 3e-38 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10024172 [exp] 137 / 5e-38 AT2G38760 349 / 1e-120 annexin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024900 [exp] 372 / 4e-130 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.007G092500 [exp] 163 / 4e-48 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.003G200700 [exp] 162 / 5e-48 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.002G095600 [exp] 154 / 7e-45 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.005G075900 [exp] 154 / 1e-44 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.001G277500 [exp] 146 / 1e-41 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024800 [exp] 124 / 3e-33 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.008G139500 [exp] 102 / 4e-25 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 89 / 2e-20 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.012G041900 [exp] 86 / 3e-19 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10039551 pacid=23165081 polypeptide=Lus10039551 locus=Lus10039551.g ID=Lus10039551.BGIv1.0 annot-version=v1.0 ATGGCTGATGATATGCAACTGGAAGCTCTCTCCAAGGCTTTCTCAGGACTGGGTGTTGATGAAAGATCACTGATATCAATCTTGGCAAAATCACCTCCGG AGCACAGGAAATCCTTCAGGAAAGGAGCTCCCCAATTGTTCCAAGAGGATGAGCGTTCTTTCGAGCGCTGGATTGACTCCCGAATCTCTCTTCTCAAGGC CGAATTCCTCCGATTCAATGAAGCAGTGGTGCTGTGGGCAATGCATCCATGGGAAAGGGATGCTCGTTTGCTGAAGGAAGCAGTGAACGAAGGTCCCAAC TCTTTTGGGGTGATTGTGGAGATTGCTTGTACCAGATCTTCTGAGCAGTTGTTGGGAGCTAGAAAAGCTTACCATTCTCTCTATGATCGCTCCGTCGAAG AAGATGTTGTCACCCACTTCCACGGCCGTCCCGAGCGCAAGCTGCTGGTGGGACTAGTGAGTGCTTACAGATATGAAGGGACAAAGGTGAACTCGGTCAC TGTTAATTCAGAAGTGAAGTTGCTGTTAAATGCTATAAGCAATGAAGCTAGCAGCAACAAGAACCCAGTTGAGGATGAAGAGGTGGTAAGAATACTAACA ACACGAAGCAAGCCCCATATCCACTCCATTTATGAACACTACAAGGAAATTGCCGGCAAAAGTATCCGCGAGGTTGTGGATGAAGCTATGAAAAAGGAGG CAGATGAGAAGACGAAGAAAGGGTTGACTCGAGTGATCGTGACTCGTGCCGACACGGACATGAAGGAGACCGAGATAGCATACAATAACTTGTTTGGAGC TTCTCTGTCGGAGAGGGTGGAAGAAGCAACAAACGGGAACTATAAGGAAATGTTGCTTACCTTGTTAACAACAGAGCATACTAGTTGA
AA sequence Show only first row Show all	>Lus10039551 pacid=23165081 polypeptide=Lus10039551 locus=Lus10039551.g ID=Lus10039551.BGIv1.0 annot-version=v1.0 MADDMQLEALSKAFSGLGVDERSLISILAKSPPEHRKSFRKGAPQLFQEDERSFERWIDSRISLLKAEFLRFNEAVVLWAMHPWERDARLLKEAVNEGPN SFGVIVEIACTRSSEQLLGARKAYHSLYDRSVEEDVVTHFHGRPERKLLVGLVSAYRYEGTKVNSVTVNSEVKLLLNAISNEASSNKNPVEDEEVVRILT TRSKPHIHSIYEHYKEIAGKSIREVVDEAMKKEADEKTKKGLTRVIVTRADTDMKETEIAYNNLFGASLSERVEEATNGNYKEMLLTLLTTEHTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	0	1
					Lus10020564 [exp]	1.4	0.9787
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	2.4	0.9751
AT1G08440			Aluminium activated malate tra...		Lus10001849 [exp]	3.2	0.9710
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	4.2	0.9679
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	4.7	0.9654
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	4.9	0.9650
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	8.2	0.9605
AT1G72490			unknown protein		Lus10015679 [exp]	8.5	0.9685
					Lus10002921 [exp]	8.9	0.9614
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	15.8	0.8958

Compare expression of checked genes

Lus10039551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.