Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035254 [exp] 101 / 3e-26 AT1G48120 41 / 1e-04 hydrolases;protein serine/threonine phosphatases (.1) Lus10009239 [exp] 97 / 4e-24 ND 44 / 3e-05 Lus10017017 [exp] 79 / 3e-18 AT1G48120 40 / 9e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10024981 [exp] 78 / 5e-18 ND / Lus10023405 [exp] 74 / 7e-17 ND / Lus10003842 [exp] 78 / 9e-17 AT1G48120 50 / 4e-07 hydrolases;protein serine/threonine phosphatases (.1) Lus10003597 [exp] 75 / 2e-15 ND / Lus10017916 [exp] 70 / 5e-15 ND / Lus10025324 [exp] 75 / 9e-15 AT3G53720 432 / 3e-143 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039552 pacid=23164980 polypeptide=Lus10039552 locus=Lus10039552.g ID=Lus10039552.BGIv1.0 annot-version=v1.0 ATGGATTACTTGTATGGACCAACACCCCTGTGCGGCGGCACCGAGCCAATCGATGGAGAACTACTTTGGGGCGACCGCAACCGACATCGCGCAGGTGAAA TTTTCGATAATGAGGAGAGTCAACATCTCTTACTCCAAAAGTACAGACAGTTGTTCGATGAGGGCACACCATTCGTGGTAAGAGCTAGTGTGTCATTCTA TTTCTTGCTAGTAGTCCCGTTTGCGGATGTTATTTACATTTCTGTCTTATCTTTCTGTGGGTCCCCTACAACGGCCGTGAGGATTCATCATTCTCTGCGG AGGCATAAAAGGTCATTGTCCCACTGCTTTCTCCTTGCAGCATCTCGTGGCATCAGCCTGACCATTTTCTCAGACAGTTTAGGATGTCCCAGCCCATCCC CACCTTCGACATGTTGGACGGCGAGGTCATGTTCTTACTCGGACTGGCATAGAGGAACAGGACGACTTGGAAGGCGAGGATGGAGCAGTACCTTGGTTAG TGGGAGAGCAGATTGGACCACGTGGCGGCGAATGTGTTTATCAATGATCCAGAGATGTGGCACTTCCACGACGAGTACATGGTGTGGTACCGTTAGTACA CACGTCGGGGATTTCGAGATGTGGGGCAGTACAACAATCCATTATTTACGGGTTGGAGAACCTATCCGTCTGGGTAGGTTCACCAGAGCAGCTCGACAGA GAGGACACAGAGGCGATTCGACAGTGTATACGTTGGGAGCAGCCTTCCTAGCAGTACCCACCCGTCCATCAGTACTAGTCGGAGACTCAGTCTCAGCATT GGGAGCAGCCTTCTCAATCTTATTAGTGGGGAAAACAACCTCCCCAATCACAGCAGTGGGGACAATAGCCTACCTTGTCACAGTATTGTGTCACCCAGAT GTCTTACGATAG
AA sequence Show only first row Show all	>Lus10039552 pacid=23164980 polypeptide=Lus10039552 locus=Lus10039552.g ID=Lus10039552.BGIv1.0 annot-version=v1.0 MDYLYGPTPLCGGTEPIDGELLWGDRNRHRAGEIFDNEESQHLLLQKYRQLFDEGTPFVVRASVSFYFLLVVPFADVIYISVLSFCGSPTTAVRIHHSLR RHKRSLSHCFLLAASRGISLTIFSDSLGCPSPSPPSTCWTARSCSYSDWHRGTGRLGRRGWSSTLVSGRADWTTWRRMCLSMIQRCGTSTTSTWCGTVST HVGDFEMWGSTTIHYLRVGEPIRLGRFTRAARQRGHRGDSTVYTLGAAFLAVPTRPSVLVGDSVSALGAAFSILLVGKTTSPITAVGTIAYLVTVLCHPD VLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039552 [exp]	0	1
					Lus10014737 [exp]	2.4	1.0000
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	3.5	1.0000
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	4.2	1.0000
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	4.9	1.0000
					Lus10012677 [exp]	5.5	0.9903
					Lus10021773 [exp]	5.5	1.0000
AT4G27170		SESA4, AT2S4	seed storage albumin 4 (.1)		Lus10040395 [exp]	6.0	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	7.0	1.0000
					Lus10019558 [exp]	7.5	1.0000
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10008000 [exp]	7.9	0.9920

Compare expression of checked genes

Lus10039552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.