Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54490 182 / 5e-57 RPB5E "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) AT3G57080 182 / 5e-57 RPB5B, NRPE5 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT2G41340 160 / 1e-48 RPB5D "RNA polymerase II fifth largest subunit, D", RNA polymerase II fifth largest subunit, D (.1) AT3G22320 102 / 1e-26 RPB5A, NRPD5, NRPB5, ATRPABC24.3 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT5G57980 76 / 3e-16 RPB5C "RNA polymerase II fifth largest subunit, C", RNA polymerase II fifth largest subunit, C (.1) AT3G16680 38 / 0.001 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024169 [exp] 369 / 3e-130 AT3G54490 221 / 7e-73 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10018022 [exp] 172 / 6e-53 AT3G57080 280 / 6e-96 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10042019 [exp] 141 / 3e-41 AT3G57080 239 / 4e-80 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10013639 [exp] 107 / 3e-28 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10001335 [exp] 107 / 3e-28 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025500 [exp] 231 / 3e-76 AT3G54490 249 / 1e-83 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.016G038500 [exp] 183 / 4e-57 AT3G57080 286 / 1e-98 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.T127006 [exp] 98 / 9e-26 AT3G54490 92 / 5e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.003G200450 [exp] 97 / 2e-25 AT3G54490 92 / 4e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.006G161600 [exp] 97 / 2e-24 AT3G22320 365 / 2e-130 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.001G179300 [exp] 82 / 1e-19 AT3G54490 92 / 6e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01191 [flax] [poplar] RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain CL0236 [flax] [poplar] PDDEXK PF03871 [flax] [poplar] RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039554 pacid=23165329 polypeptide=Lus10039554 locus=Lus10039554.g ID=Lus10039554.BGIv1.0 annot-version=v1.0 ATGCATTTCCGAATCTGGTATAAAATTACAGTCATCATCAGCCCTCAGGGAGAGAAAGGCGTCACAGTTACAGCTCACTCTTTTAAGGCGAGCAGCTCGA ACAATGCTGTTGACGGCGGTCTAGGACTCACTGCAGACGGCGGCAGAGGTAATGGTCGGCAGTGTTTAACGGAGTTTACAGAGCCAGGGAGCGTGGAGAG CCTCAGGTACTACCACTGCCGTCGTACGGTCTTTGAAATGTTGAACGACCGAGGTTACGAAGTCTCTGACGCTGAGCTGACCCGTACGCTCGCTGATTTC CGTACCGAGTTCGGCGACAACTCCGCTTCACCGTGTCTCTCCGCTCTGATACTCGCAAGAAGGGTTGTTCTCTGTTCTAAGGTTCTTGTTCTATTCATGG GGGCCAATGAGTTGAAAGTTCAGGTGGTAAGAAATGTCTACAAACAGATTCTAGGAGAAGCCTTGTCACTACAAGGGCTGATACTGATCTTGGAAGCCAA GGCGTCCAGTTATGCTAAGAAGGCGCTTGACACATTCCCATTCAAGGTGGAAGTCTTTCAAATTAGTGACTCGATCGTGAATATAACCAAGCATGTCCTG CAGCCAACGTATAAACTACAGACAACTCGAGAGAAGCAGTTGCTACTCAACAAGTTCAAAGTAGAAGACAAACAGCTCCATATGATGCAACAAAATGATG CCATGGTGAAATACTACGGAATGGAGAAGGGGCAGGTGGTGAAAATTGGTTACGAAGGTGGGCTAATTGATTCACTGACTACTTACCGATGCGTGGTTTG A
AA sequence Show only first row Show all	>Lus10039554 pacid=23165329 polypeptide=Lus10039554 locus=Lus10039554.g ID=Lus10039554.BGIv1.0 annot-version=v1.0 MHFRIWYKITVIISPQGEKGVTVTAHSFKASSSNNAVDGGLGLTADGGRGNGRQCLTEFTEPGSVESLRYYHCRRTVFEMLNDRGYEVSDAELTRTLADF RTEFGDNSASPCLSALILARRVVLCSKVLVLFMGANELKVQVVRNVYKQILGEALSLQGLILILEAKASSYAKKALDTFPFKVEVFQISDSIVNITKHVL QPTYKLQTTREKQLLLNKFKVEDKQLHMMQQNDAMVKYYGMEKGQVVKIGYEGGLIDSLTTYRCVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10039554 [exp]	0	1
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	1.0	0.8767
AT1G03055			unknown protein		Lus10024837 [exp]	4.9	0.8372
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	8.2	0.8600
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	10.1	0.8577
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	11.0	0.8460
AT5G05370			Cytochrome b-c1 complex, subun...		Lus10035013 [exp]	13.4	0.7997
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	14.0	0.8566
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	15.4	0.8027
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	17.5	0.8318
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	18.7	0.8315

Compare expression of checked genes

Lus10039554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.