Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54480 365 / 2e-128 SKP5, SKIP5 SKP1/ASK-interacting protein 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024168 [exp] 460 / 4e-166 AT3G54480 370 / 3e-130 SKP1/ASK-interacting protein 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025601 [exp] 384 / 2e-136 AT3G54480 372 / 2e-131 SKP1/ASK-interacting protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10039556 pacid=23165101 polypeptide=Lus10039556 locus=Lus10039556.g ID=Lus10039556.BGIv1.0 annot-version=v1.0 ATGGGTGTGGCGGGAGAGGATTGCAAGAAGCAAGTTTGTAAGAAGTCGAGGAAGAAGTCTGCAGCTGCTTCTCCTTCTTCTTCTGGCCCTCGCCTTTCCC CAATTAGCAGCCTCGATGATGGCTGCCTTATGCACATCTTCAGCTTCTTATCTCCTATTCCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCG CTTCTTGGCGTGTCATCCTCGTCTATGGCTCCGAGTAGACCGTGCTGTGAAAGATCTTACAGAACCTGGAGTCTTCCCAAATGTCGAAACAGCTGTTTCT GCCGCTAGACCTGGAGACACCATTCTAATTGCAGCAGGTGGGAGTCATTTTGCTTCTAACATTCTGATGAATAAACCACTCTGCCTGGTTGGTGGAGGAG ATATTCCTGACGAAACGACACTTTTCTGCTCTCGAGGTTCGGACAGTGCACTGGAGTTCCTGTCATCTTGCAAGTTAATGAACCTAACTGTGAAAACGGA GCTGGGTTGTTGCTTGCTTCACAAAAGTGGGAGGCTGACGATAGATGGCTGCGTTCTTCAGTGCGAATCTAACCCTCTGGATTATCTCTCATGTCCTATT ATAAGCACAGCTGGTGTATTTGAGGTTCTGTCTTCAACTGCCAAGAAGGGCAGCAATGGAGTCTCTGTTTCTCAAACACGAATCGAAGGAGGTGCTAAGG CTGTACTGGCAAATGGAGGCCTGACTTTGCAGCGGGTTCGGGTAATATATGCTCGAGCTTGTGTTTACTTCTGGTTCGACGTAGACCACCATTGA
AA sequence Show only first row Show all	>Lus10039556 pacid=23165101 polypeptide=Lus10039556 locus=Lus10039556.g ID=Lus10039556.BGIv1.0 annot-version=v1.0 MGVAGEDCKKQVCKKSRKKSAAASPSSSGPRLSPISSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRFLACHPRLWLRVDRAVKDLTEPGVFPNVETAVS AARPGDTILIAAGGSHFASNILMNKPLCLVGGGDIPDETTLFCSRGSDSALEFLSSCKLMNLTVKTELGCCLLHKSGRLTIDGCVLQCESNPLDYLSCPI ISTAGVFEVLSSTAKKGSNGVSVSQTRIEGGAKAVLANGGLTLQRVRVIYARACVYFWFDVDHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	0	1
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	3.3	0.8929
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	5.2	0.8847
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	5.4	0.8427
AT5G17070			unknown protein		Lus10002137 [exp]	6.0	0.8852
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	8.9	0.8697
AT1G63855			Putative methyltransferase fam...		Lus10028415 [exp]	9.5	0.8826
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	10.8	0.8619
AT3G24060			Plant self-incompatibility pro...		Lus10023675 [exp]	12.8	0.8309
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	13.4	0.8831
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10006383 [exp]	18.4	0.8470

Compare expression of checked genes

Lus10039556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.