Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29050 351 / 2e-119 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 335 / 6e-113 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 330 / 2e-111 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT3G14850 320 / 2e-107 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G31110 313 / 1e-104 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30900 300 / 1e-99 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G78710 292 / 1e-96 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G58600 272 / 5e-88 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 232 / 1e-72 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT5G20590 231 / 2e-71 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039559 [exp] 526 / 0 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10019774 [exp] 424 / 7e-148 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 424 / 1e-147 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 343 / 3e-116 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 342 / 7e-116 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 322 / 5e-108 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10002198 [exp] 320 / 3e-107 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10033617 [exp] 304 / 4e-101 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10031301 [exp] 290 / 5e-95 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201700 [exp] 422 / 2e-147 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 413 / 7e-144 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 384 / 1e-132 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G064700 [exp] 355 / 3e-121 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 340 / 2e-115 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 331 / 1e-111 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.019G090200 [exp] 328 / 2e-110 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.013G118500 [exp] 318 / 1e-106 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106200 [exp] 317 / 6e-106 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 313 / 6e-105 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10039557 pacid=23164989 polypeptide=Lus10039557 locus=Lus10039557.g ID=Lus10039557.BGIv1.0 annot-version=v1.0 ATGGTTCCGAAGAGATCATCATCTCTAGTCCCTTTGTTTTTTCACTGGACGTATTTGACATGCTTTCTTTCTCTGTCGGCCGCCGGTTGCAATAATAGCG CAGCTGATTTTTGGGATCAGTCAGGAAGTAGAAGCAGCAACGTCGGCGGCCAGTGCAGCAATTTGTACGATGGGATATGGGTTCTCGACAAGTCATATCC GCTCTACAATTCGTCCACGTGTCCTTTCGTACGGAAGGAGTTTGATTGCTTGAAATTTGGCCGCCTCGACCATCAGTACCTTCAGCATCGATGGCAGCCT TCTGGCGGCTGTATTTTACCCCGGAAAAATGAAAATGGAGCTTGTATGTATGTATGTATGTCACAAAACAGATTCAATGGAATGGAATTCTTAAGGAGGA TGAGGGGGAAGAAGATAATGTTGGTAGGGGACTCAATTAGTATGAATCAATATAACTCACTGCTATGCTTGATTCATGCTTCTATTCCTCCTAATTCCAA AATCACAACTCTCACTCAACCATTCCCAACTGTTACATTTGATGACTATGGTGTATCAATAATGTTGCACACAACTCACTTCCTAGTAGATATCATTCAG GAAAAGATTGGAGCCGTCTTAAATCTCAACTCAATTACCATCGGCGGCAATATTTGGAAGCAAATGGATCTTCTCGTTTTCAACACTTGGCTTTGGTGGC ACAGGACCGGACCTAAGCAAGGTTGGGAATATATTCAAGATGGGAAAACTATATCCAAAGATATGAATCGAATGACGGCTTTCTCGATAGCAATGAAGAC ATGGGCAAGATGGGTGGATCTAAGCGTGGATACTACCAAAACTACAGTTTTCTTTCAGGGCGTTTCACCGGCTCATTACCATGGTGCTGATTGGGGAGAG GCTGGAGTGGGAGATTGTTCACGGGAGACGACGCCGATAGCAGGACCTACTCGAGCAGTAATGTCATTGGCATTGAAAGTACAAGAAGATGCCGTCGCAA CGATTAAGAAACCAGTTCATTTCCTCAACATAACCGCAATGTCGAATATGAGAAAAGACGGGCATCCTTCTTCACACAATGGCTTTCACGGCATGGATTG TACTCATTGGTGTGTTGCTGGCGTTCCTGATACTTGGAATCAATTTATCTACTCTGTTCTCGTTCCTTGA
AA sequence Show only first row Show all	>Lus10039557 pacid=23164989 polypeptide=Lus10039557 locus=Lus10039557.g ID=Lus10039557.BGIv1.0 annot-version=v1.0 MVPKRSSSLVPLFFHWTYLTCFLSLSAAGCNNSAADFWDQSGSRSSNVGGQCSNLYDGIWVLDKSYPLYNSSTCPFVRKEFDCLKFGRLDHQYLQHRWQP SGGCILPRKNENGACMYVCMSQNRFNGMEFLRRMRGKKIMLVGDSISMNQYNSLLCLIHASIPPNSKITTLTQPFPTVTFDDYGVSIMLHTTHFLVDIIQ EKIGAVLNLNSITIGGNIWKQMDLLVFNTWLWWHRTGPKQGWEYIQDGKTISKDMNRMTAFSIAMKTWARWVDLSVDTTKTTVFFQGVSPAHYHGADWGE AGVGDCSRETTPIAGPTRAVMSLALKVQEDAVATIKKPVHFLNITAMSNMRKDGHPSSHNGFHGMDCTHWCVAGVPDTWNQFIYSVLVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039557 [exp]	0	1
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	7.4	0.8123
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	11.4	0.8063
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	15.7	0.7861
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10038939 [exp]	21.4	0.7763
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	21.6	0.7211
					Lus10003818 [exp]	22.5	0.6217
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	30.0	0.6859
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	31.6	0.7842
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	32.0	0.7715
					Lus10036026 [exp]	44.3	0.6678

Compare expression of checked genes

Lus10039557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.