Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29050 353 / 6e-121 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 337 / 4e-114 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 331 / 4e-112 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT3G14850 327 / 1e-110 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G31110 313 / 4e-105 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30900 310 / 6e-104 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G78710 302 / 6e-101 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G58600 271 / 2e-88 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 241 / 9e-77 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT5G20590 237 / 4e-74 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039557 [exp] 493 / 2e-175 AT1G29050 351 / 2e-119 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10019774 [exp] 420 / 5e-147 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 417 / 1e-145 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 351 / 5e-120 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 350 / 2e-119 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 325 / 9e-110 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10033617 [exp] 312 / 9e-105 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10002198 [exp] 311 / 2e-104 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10009209 [exp] 289 / 8e-96 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201700 [exp] 433 / 3e-152 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 433 / 3e-152 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 401 / 7e-140 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G064700 [exp] 360 / 1e-123 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 346 / 5e-118 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 341 / 2e-116 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.011G106200 [exp] 337 / 9e-115 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 329 / 2e-111 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106300 [exp] 328 / 3e-111 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.013G118500 [exp] 325 / 5e-110 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10039559 pacid=23165262 polypeptide=Lus10039559 locus=Lus10039559.g ID=Lus10039559.BGIv1.0 annot-version=v1.0 ATGGTTTTCAGCTCCACAGTGACATCATGTCTTGTCCCGTTGGTGGCTACCTGCATAAGTCTTGCTCTGGTCGCCGGTGCTGTCGACGCTGCCGGTCGAT GCAGCAATTTGTATGAAGGTAGTTGGGTTTCGGACATGACCTACCCAGCCTACAACTCTTCGACGTGTCCTTTTATCAGGAAGGAGTTCGATTGCGTGAA ATACGGTAGGTTGGACCAGCAGTATCTTCAGTATCGGTGGCAGCCTTCTCGCCGTTGTATTTTGCCCAGATTTAACGGGGGTGCATTCTTAAGGAGGATG AGGGGGAAGAAGATAATGTTCATAGGGGACTCGATTAGTATGAATCAGTATAACTCATTGTTGTGCCTGCTTCATGCTTCCATTCCTTCGAATTCCAATT TCACAACTACCAACACACCTCTACCCACGGTTACATTCCAGAAGTATGGAGTATCAGTAATGTTGTTCACGAACCATTACTTAGTAGATATCCAGCAAAC AAAGGTTGGAGCCGTTTTAAATCTGAACTCGATCAGCAATGGCAAACTTTGGAAACAAATGGACGTTCTTGTTTTCAACACTTGGCTCTGGTGGTACACC AAAGGACCAAAGCAAGGTTGGAAATATATTCAAGATGGGAAGAAGATATCAAAAGATATGGATCGAATGACTGCCTTCACAAAAGCTATGAATACATGGG CAAAATGGGTTGATTTGACCGTGAATCCAACTAAAACTACAGTATTCTTTCAGGGTGTCTCCCCATCTCATTACAATGGCACAGATTGGGGTAATCCCGG AGTGCAAAATTGTGGTGGGGAGACAGCCCCTATTGAAGGGCCAACTCGAGCAGTGAAGCCATTGGCATTGAAAGTTCAAGAAGACGTCGTTGCAACTATT AAAAAACCAGTTCATTTTCTCAACATAACTGAATTGTCGAATATGAGAAAAGATGGGCATCCATCTTCTCACAATGGGCTTGGCGGCATGGATTGCCTCC ACTGGTGTGTTGCCGGTGTCCCAGATACTTGGAATCAATTTCTCTACTCTGTCCTCATGCAGCAAAGATAA
AA sequence Show only first row Show all	>Lus10039559 pacid=23165262 polypeptide=Lus10039559 locus=Lus10039559.g ID=Lus10039559.BGIv1.0 annot-version=v1.0 MVFSSTVTSCLVPLVATCISLALVAGAVDAAGRCSNLYEGSWVSDMTYPAYNSSTCPFIRKEFDCVKYGRLDQQYLQYRWQPSRRCILPRFNGGAFLRRM RGKKIMFIGDSISMNQYNSLLCLLHASIPSNSNFTTTNTPLPTVTFQKYGVSVMLFTNHYLVDIQQTKVGAVLNLNSISNGKLWKQMDVLVFNTWLWWYT KGPKQGWKYIQDGKKISKDMDRMTAFTKAMNTWAKWVDLTVNPTKTTVFFQGVSPSHYNGTDWGNPGVQNCGGETAPIEGPTRAVKPLALKVQEDVVATI KKPVHFLNITELSNMRKDGHPSSHNGLGGMDCLHWCVAGVPDTWNQFLYSVLMQQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	0	1
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	1.4	0.9612
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020481 [exp]	3.0	0.9379
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020480 [exp]	4.0	0.9432
					Lus10021373 [exp]	4.5	0.9439
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039349 [exp]	5.5	0.9362
AT4G02830			unknown protein		Lus10042573 [exp]	6.9	0.9434
AT2G14830			Regulator of Vps4 activity in ...		Lus10033703 [exp]	7.4	0.9415
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10042040 [exp]	8.4	0.9397
					Lus10003493 [exp]	9.8	0.9019
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	10.0	0.9250

Compare expression of checked genes

Lus10039559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.