Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29050 96 / 1e-23 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 94 / 7e-23 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT1G78710 93 / 1e-22 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G42570 86 / 4e-20 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 83 / 8e-20 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G14850 84 / 1e-19 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G30900 79 / 2e-17 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT3G55990 77 / 1e-16 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 72 / 7e-15 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT5G58600 71 / 1e-14 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039559 [exp] 169 / 1e-51 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039557 [exp] 162 / 1e-48 AT1G29050 351 / 2e-119 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 132 / 4e-37 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10019774 [exp] 123 / 8e-34 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 98 / 2e-24 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 98 / 3e-24 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10020786 [exp] 95 / 9e-24 AT2G30900 298 / 1e-100 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Lus10015309 [exp] 96 / 1e-23 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10007367 [exp] 91 / 2e-23 AT2G30900 166 / 4e-51 TRICHOME BIREFRINGENCE-LIKE 43 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G201700 [exp] 131 / 5e-37 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 130 / 1e-36 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 129 / 5e-36 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 99 / 7e-25 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.004G055000 [exp] 96 / 1e-23 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 96 / 1e-23 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 95 / 3e-23 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 92 / 5e-22 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.013G118500 [exp] 91 / 7e-22 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106300 [exp] 87 / 2e-20 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10039560 pacid=23165369 polypeptide=Lus10039560 locus=Lus10039560.g ID=Lus10039560.BGIv1.0 annot-version=v1.0 ATGGTTCCGAGCTCGACGCAGAGATCATGTAGTATTTTTCCGAGTTATTTGGCGTGCTTTCTTGGATTGGCCGCCGGTGTGGTGGCAGCGGCCTACGGCA GGAAAAGAACAAAGGAACGATGCAGTAATGTGTACCAAGGTAGCTGGGTTCCCGACGAGAGATATCCGGTTTACAATTCGTCCACGTGTCCTTCCATTCA TATGAAGTTCGATTGCTCTCAGTATACCGGTAGCAGCCTTCTGGCCGCTGTATTTTGCCCAGGTGTTTCTCCTAATCATTACAATGGTGTGGATTGGGAG AAGCCGAGGACGACAAATTGTGCCCGTGAGACCACACCAATAGCAGGACCAACTCGAGCCATTAAGCCGTTGGCTTTACAGGTACAAGAAGACGTTATCG CAACTATTATGAAACCTGTTCATTTTCTAAACATAACCGCGATGTCGAATATGAGAAAGGATGGACATCCTTCTTCACACGGTGGATATGGCAGCATGGA TTGCCTCCATTGGTGTGTTGCCGGTGTCCCCGATACTTGTCTCTACTCTGTCCTCATTCCTTAA
AA sequence Show only first row Show all	>Lus10039560 pacid=23165369 polypeptide=Lus10039560 locus=Lus10039560.g ID=Lus10039560.BGIv1.0 annot-version=v1.0 MVPSSTQRSCSIFPSYLACFLGLAAGVVAAAYGRKRTKERCSNVYQGSWVPDERYPVYNSSTCPSIHMKFDCSQYTGSSLLAAVFCPGVSPNHYNGVDWE KPRTTNCARETTPIAGPTRAIKPLALQVQEDVIATIMKPVHFLNITAMSNMRKDGHPSSHGGYGSMDCLHWCVAGVPDTCLYSVLIP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	0	1
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	2.4	1.0000
					Lus10003941 [exp]	3.7	1.0000
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	4.2	1.0000
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	5.3	1.0000
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	5.5	1.0000
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	6.0	1.0000
					Lus10017294 [exp]	6.5	1.0000
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	6.9	1.0000
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	7.7	0.9572
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	9.0	0.9632

Compare expression of checked genes

Lus10039560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.