Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13650 157 / 5e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 154 / 1e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 153 / 3e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 152 / 5e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 151 / 1e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 148 / 3e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 146 / 9e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 145 / 5e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT5G42510 144 / 7e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G38700 134 / 5e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029306 [exp] 176 / 6e-56 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017231 [exp] 167 / 1e-52 AT1G58170 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 161 / 3e-50 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 160 / 4e-50 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025065 [exp] 150 / 1e-45 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 149 / 1e-45 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 147 / 5e-45 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 146 / 2e-44 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 147 / 3e-44 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023800 [exp] 230 / 1e-77 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 181 / 4e-58 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G131000 [exp] 179 / 1e-57 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 178 / 3e-57 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 177 / 1e-56 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 172 / 6e-55 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023600 [exp] 172 / 7e-55 AT5G49040 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 170 / 8e-54 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216300 [exp] 169 / 3e-53 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G009100 [exp] 167 / 8e-53 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10039561 pacid=23165173 polypeptide=Lus10039561 locus=Lus10039561.g ID=Lus10039561.BGIv1.0 annot-version=v1.0 ATGTCTTCTGCTTCTTCTCATTACCTTTTCGCCGCCACCATCTGCTGCATACTACTATGTACACCTCTTGTTTCCACTATTCATGCAGCATTCTCTGAGG AAATATTCGAAGGAATAGCCATAAAACGTATAGAGAAATCCGTCCATCTTCATTTCTACTTCCATGACATCCTCAGTGGCAAGAATCCTTCAGCTGTGCG GATTGCTGGCCCTGCTGATGGTTCAATGGCCGCATTTGGGAACACCATGGCAATGGACGATCCATTGACCGAAGGACCTGAAGCGAGCTCCAAGGTGATC GGTAAAGCTCAAGGGCTGTACTCTTTGGCCTCCAGGGATGATTTCTCGTTGCTGATGGTCATGAACTTTGCCTTCACTCAAGGTAACTACACTGGAAGCA GCATCAGCATTCTGGGGAGGAACCCAATCATGGATGACCAGAGAGAGATGCCAATCGTCGGAGGGTGCGGGGTGTTTAAGGAAGCTCGAGGAAACGTGAT GGCGCATACTTACTGGTTTGATCCCAAAACTGGGGATGCCATTGTCGAATATAACGCTTATGTGAGGTATACCTCATAG
AA sequence Show only first row Show all	>Lus10039561 pacid=23165173 polypeptide=Lus10039561 locus=Lus10039561.g ID=Lus10039561.BGIv1.0 annot-version=v1.0 MSSASSHYLFAATICCILLCTPLVSTIHAAFSEEIFEGIAIKRIEKSVHLHFYFHDILSGKNPSAVRIAGPADGSMAAFGNTMAMDDPLTEGPEASSKVI GKAQGLYSLASRDDFSLLMVMNFAFTQGNYTGSSISILGRNPIMDDQREMPIVGGCGVFKEARGNVMAHTYWFDPKTGDAIVEYNAYVRYTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	0	1
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	1.4	0.9944
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	2.8	0.9912
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	4.6	0.9888
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	6.3	0.9878
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	6.9	0.9861
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	7.1	0.9863
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	7.3	0.9833
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	7.5	0.9855
AT1G76250			unknown protein		Lus10012274 [exp]	7.5	0.9735
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	7.7	0.9811

Compare expression of checked genes

Lus10039561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.