Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67140 316 / 2e-110 F-box/RNI-like superfamily protein (.1) AT1G21410 75 / 1e-15 SKP2A F-box/RNI-like superfamily protein (.1) AT2G25490 67 / 1e-12 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 61 / 2e-10 EBF2 EIN3-binding F box protein 2 (.1) AT1G77000 58 / 1e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G23340 57 / 2e-09 RNI-like superfamily protein (.1) AT3G58530 55 / 1e-08 RNI-like superfamily protein (.1) AT5G01720 53 / 5e-08 RNI-like superfamily protein (.1) AT3G60350 51 / 2e-07 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT1G12820 50 / 5e-07 IPS1, AFB3 auxin signaling F-box 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024178 [exp] 362 / 8e-129 AT5G67140 271 / 4e-93 F-box/RNI-like superfamily protein (.1) Lus10012294 [exp] 61 / 1e-10 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10002913 [exp] 60 / 3e-10 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10018942 [exp] 59 / 6e-10 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10036412 [exp] 59 / 8e-10 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10002014 [exp] 59 / 8e-10 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10015980 [exp] 58 / 1e-09 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1) Lus10041087 [exp] 56 / 4e-09 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10028645 [exp] 56 / 4e-09 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140000 [exp] 327 / 2e-114 AT5G67140 334 / 2e-117 F-box/RNI-like superfamily protein (.1) Potri.007G045601 [exp] 137 / 2e-41 AT5G67140 151 / 2e-47 F-box/RNI-like superfamily protein (.1) Potri.005G185700 [exp] 69 / 3e-13 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.002G074700 [exp] 67 / 1e-12 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.006G254100 [exp] 58 / 1e-09 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.016G128400 [exp] 56 / 7e-09 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 55 / 9e-09 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 54 / 2e-08 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.003G179100 [exp] 54 / 2e-08 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 54 / 2e-08 AT5G27920 631 / 0.0 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039564 pacid=23165236 polypeptide=Lus10039564 locus=Lus10039564.g ID=Lus10039564.BGIv1.0 annot-version=v1.0 ATGGAGAAGAGGAAGGAGGGCGGAGGAGGAGAGATTGATGGGCTGCCGACAGACCTCCTCTCTTACATATTTACACTCCTCGTTTCCTTCACCGATTTAG CTCAGGCGAGCGGGGTTTGCAGGAAATGGAGGGAAGGAGTGAAGCAGTCGATAGGAAGAAGAGAAAGATTGAGCTTTGCTGGGTGGAAGATGGACGATCA CTCCACCTCCCGCCTCCTCCATCTCGCCTTCTCCCTCAAACAACTTGATATATCAAGAAGCAGGTGGGGTTGCCAAATTACAGACGATGGACTTGACAGA ATCTCTTCTGCACACTGCATTCCCAACCTTACTTCTATCTCCCTTTGGGGCATCACCGGCATCACCGATCTCGGCGTTGTTCACCTCATATCCAAAGCCA TCTCCCTGCAGCATCTCAACATTGGCGGTACCTTCATCACCGACGACTCCTTATTTGCAATTGCCGATAGCTGCCCCAATTTGAAGAGCATTGTGTTGTG GAGCTGCCGTCATGTGACTGAGGTTGGACTTGTTAGCCTTGTAAATAAATGCCAGAAACTCAAGGTGATCGATGTGTGGGGTACCAGGATTCCAGTCGAC TGCTTCATCGCTCTGCTCGCCATTAGCCCGGCTCTTCAGATTAAGGCTGCTGGTTTACTGGCAATCAATACTGCGGCATCCTCTGCTCCAGTACTTGTGC CTGTTGCTTAA
AA sequence Show only first row Show all	>Lus10039564 pacid=23165236 polypeptide=Lus10039564 locus=Lus10039564.g ID=Lus10039564.BGIv1.0 annot-version=v1.0 MEKRKEGGGGEIDGLPTDLLSYIFTLLVSFTDLAQASGVCRKWREGVKQSIGRRERLSFAGWKMDDHSTSRLLHLAFSLKQLDISRSRWGCQITDDGLDR ISSAHCIPNLTSISLWGITGITDLGVVHLISKAISLQHLNIGGTFITDDSLFAIADSCPNLKSIVLWSCRHVTEVGLVSLVNKCQKLKVIDVWGTRIPVD CFIALLAISPALQIKAAGLLAINTAASSAPVLVPVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040380 [exp]	1.4	0.9377
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	2.4	0.9333
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001756 [exp]	2.4	0.9062
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	2.4	0.9247
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005965 [exp]	3.0	0.9006
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	3.7	0.9042
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	5.3	0.9161
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	5.5	0.9082
AT5G59050			unknown protein		Lus10001626 [exp]	7.2	0.8909
AT1G27930			Protein of unknown function (D...		Lus10012537 [exp]	9.8	0.9021

Compare expression of checked genes

Lus10039564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.