Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 361 / 1e-116 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT1G13750 342 / 2e-109 Purple acid phosphatases superfamily protein (.1) AT4G24890 339 / 3e-108 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT2G03450 237 / 4e-69 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT1G13900 235 / 2e-68 Purple acid phosphatases superfamily protein (.1) AT3G52780 127 / 2e-31 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT4G13700 119 / 2e-28 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52810 115 / 3e-27 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G20500 114 / 6e-27 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 113 / 1e-26 ATPAP22, PAP22 purple acid phosphatase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024179 [exp] 1106 / 0 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 973 / 0 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 967 / 0 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019771 [exp] 901 / 0 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 334 / 2e-106 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036904 [exp] 333 / 6e-106 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 331 / 3e-105 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10004661 [exp] 245 / 5e-72 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037091 [exp] 241 / 1e-70 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202200 [exp] 942 / 0 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 941 / 0 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 347 / 3e-111 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.012G097400 [exp] 343 / 1e-109 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.015G095900 [exp] 332 / 1e-105 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 322 / 1e-101 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 313 / 3e-98 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G160500 [exp] 240 / 2e-70 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.006G063700 [exp] 128 / 2e-31 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.001G423700 [exp] 126 / 5e-31 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10039565 pacid=23165284 polypeptide=Lus10039565 locus=Lus10039565.g ID=Lus10039565.BGIv1.0 annot-version=v1.0 ATGGAGCTGCTACCACTTTACCTTCTTCTCATTGCAGCCGTGCTCCTTCATTCTTCTGCTTCTTCGTCAGCGCATTCGTCCAGCTTGCATCCCGCTGTGG CTTACTCCATGATGGAGCACCGTGACCACACCGGTATTTCGGGCTTTAGAGTACTGAACAGGAGGTCGCTGGGTCAGTGTCCTGACCCGAATCCTTACCT GGACATAACGGTCAGCGCCAACCAGCTGCTGGCCGATGAAGAGTACGTCAAGGTTACCGTTAGCGGGGTTCTGGTCCCGTCCGAATTGGATTGGATCGGA ATGATATCTCCTTCCGATTCTGATGTGTCGGCTTGTCCATTGAAGAAAGCAGAGTATCTTCAGACGGGAGACCTTGCACATCTTCCTCTCCTCTGCCATT ATCCTGTTAAGGGGCAGATGGTGAGCAGTGATGGAGATTACCTGGGATGCAAGAGAAAACACTGCCAAAAGTCTAAGGGCCCCACCTGCAGTGTCTCCAC TTGTAATGCCACCATAACATTCCACGTCGTCAACTTCAGAACTGACGTGGAATTCGTTTTCTTCACCGGCGGCTTCGACGCACCCTGTATACTCGCAAGA TCCGGACCGTTGAAATTCGCCAATCCAAACCAGCCCCTCTATTCTCACATCTCCACCGTCGATTCTTCAGCAACTTCCATGAAGGTGACATGGGTGAGTG GAAGTGACGAGTCTCAGCAAGTCAAGTATGGTGATGGCCGAACCATTACTTCAGAAGCCACTACATTTACTCAGGATGACATGTGCTCCTCTCTTCTTCC AAGTCCAGCCAAGGACTTTGGATGGCATGACCCTGGGCACATCCACTCAGCAATCATGACTGGACTCCAACCTTCAAACACCTACTCCTTCAAATATGGA AGTGATTCAGTAGGGTGGAGCGAAGAGATGAAGTTCAAGACACCACCAGCTGGAGGATCAGATGAAGTGAGGTTTCTAGCTTACGGTGACATGGGGAAGG CCCCTCTTGACCCTTCTGCTGAACACTATATCCAGCCAGGATCCCTTTCCGTGGTGAAGGCCATGACTAAAGAAGTCGAATCGGGGAACGTAGATTCCAT CTTCCACATTGGAGATATCAGCTACGCCACTGGATTCCTGGTCGAATGGGACTACTTCCTTCAGCTTATTAGCCCCTTGGCTTCCCAGGTCTCCTACATG ACTGCGATAGGAAACCACGAGAGAGATTATATTAATACTGGATCGGTTTATGGTACACCTGACTCTGGTGGGGAATGTGGAGTTCCTTATGAGACATATT TCCCAATGCCAACCTCGGAGAAGGACAAGCCATGGTATTCCATTGAACAAGGCAGTGTCCACTTCACTGTCATTTCCACTGAGCATCCTTGGTCTGACGG CTCTGAACAGCTAGAATGGATGAAGAGTGACATGGCTTCAGTTGACAGATCAAAGACTCCTTGGCTGGTCTTTGCAGGGCATAGACCTATGTATTCATCT TCAAACCCAACAAGCGCAGACGAAAAGTTTGTGGAAATAGTAGAGCCATTGATGCAGCAGTACAAGGTAGATGTAGCACTATTTGGACATGTACACAACT ACGAGAGGATGTGTTCTGTTTACCAAGGGGATTGCCTCGCAATGCCTACGAAAGACGAAAATGGTGTGGACATCTACGATCACAACAATTACAGTGCACC AGTTCAGGCAGTGATAGGCATGGCTGGTTTCAAATTGGACAAATTCTCTGACATTGTGGCGCCTGAAAAATGGAGCTTGAGAAGGATTGCAGAGTATGGA TACATGAGAGCTCATGCTACAAGGACTGAGTTCAATATTGAGTTCGTGAATGCGAATACGTTAAGTATTCATGACAGTTTCCGCATTATCAAATCAGCAA ACTAA
AA sequence Show only first row Show all	>Lus10039565 pacid=23165284 polypeptide=Lus10039565 locus=Lus10039565.g ID=Lus10039565.BGIv1.0 annot-version=v1.0 MELLPLYLLLIAAVLLHSSASSSAHSSSLHPAVAYSMMEHRDHTGISGFRVLNRRSLGQCPDPNPYLDITVSANQLLADEEYVKVTVSGVLVPSELDWIG MISPSDSDVSACPLKKAEYLQTGDLAHLPLLCHYPVKGQMVSSDGDYLGCKRKHCQKSKGPTCSVSTCNATITFHVVNFRTDVEFVFFTGGFDAPCILAR SGPLKFANPNQPLYSHISTVDSSATSMKVTWVSGSDESQQVKYGDGRTITSEATTFTQDDMCSSLLPSPAKDFGWHDPGHIHSAIMTGLQPSNTYSFKYG SDSVGWSEEMKFKTPPAGGSDEVRFLAYGDMGKAPLDPSAEHYIQPGSLSVVKAMTKEVESGNVDSIFHIGDISYATGFLVEWDYFLQLISPLASQVSYM TAIGNHERDYINTGSVYGTPDSGGECGVPYETYFPMPTSEKDKPWYSIEQGSVHFTVISTEHPWSDGSEQLEWMKSDMASVDRSKTPWLVFAGHRPMYSS SNPTSADEKFVEIVEPLMQQYKVDVALFGHVHNYERMCSVYQGDCLAMPTKDENGVDIYDHNNYSAPVQAVIGMAGFKLDKFSDIVAPEKWSLRRIAEYG YMRAHATRTEFNIEFVNANTLSIHDSFRIIKSAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	0	1
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	2.4	0.9165
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	2.6	0.9291
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	6.7	0.8894
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039557 [exp]	7.4	0.8123
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	7.5	0.8815
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	9.2	0.8847
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	10.2	0.8840
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	11.2	0.9125
					Lus10037674 [exp]	12.7	0.7746
AT2G42900			Plant basic secretory protein ...		Lus10031462 [exp]	13.4	0.8412

Compare expression of checked genes

Lus10039565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.