Plant FIBer expression Database

Lus10039566 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30870 669 / 0 ATMUS81 ARABIDOPSIS THALIANA MMS AND UV SENSITIVE 81, Restriction endonuclease, type II-like superfamily protein (.1)
AT5G39770 272 / 1e-78 Restriction endonuclease, type II-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G202300
[exp]
782 / 0 AT4G30870 689 / 0.0 ARABIDOPSIS THALIANA MMS AND UV SENSITIVE 81, Restriction endonuclease, type II-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF02732 ERCC4 ERCC4 domain
Representative CDS sequence
>Lus10039566 pacid=23164986 polypeptide=Lus10039566 locus=Lus10039566.g ID=Lus10039566.BGIv1.0 annot-version=v1.0
ATGGCGAACCGGGTACGGGTCGTGTGCCCTGAAAACGAAGAGCTTGCTTCGTGCTTGCTTCAGAAGAAGACAGAAATGGCTGGTTCTCCTAAAGGCTTAT
CTCCGAAGTTGGATATGACTCTATCTAAAGCCTATACCAGTGTTTGTTGTGCCAAGACGCCCATCGAAACCCCAAAGCAGTTCTCTAAACTCAAGGGCAT
TGGTTCATGGCTGGTGAAGCAGATGGAAAGCTTTTTTAAAGATGCTTCTATAAGTCTAGAACCTGAGGACTTGCCTGTAAAAGGAAAGAGAGGTAGAGCC
AAAAAACGTTATGTGCCCCAAAAGAATACTGCAGCATATGCGCTACTGATCACACTTTATAGGGGAACTTCAAATGGTAACGAGTTTATGCGTAGGCAGG
AGCTGATTGATGCTACTGAAGTTAGTGGACTTTCTCAAGGGCCAATTGGTCCAGAAAAGGGCAAAGGCAAGCCATCACAATTTGGAAGTTCAGGTAGAGA
CTGGTATAGTGGATGGAGCTGCATGACAACATTGATATCTAAAGGATTAGTTGTCAAGTCGAGTTCCCCTGCAAAGTACATGCTAACACAGGAAGGACGT
GATGTAGCAAAGGAATGTCTGGCTAGATCTTGCATGGTGGACCCTGTGCAGACAATAGCTGGTGCGGAGGATTCAGGTAATTTGGACATTATAAATATAA
CAGATGATGATCCAGTTCAGCTTCAGCCAACACCCCCAGAAGTTACAATCCGATCAGAGGATTTAAGTGGGCAGGAGAGATCTGTTGATGTTCCTCCTCA
ATCTCTAGAGAGGTTTCTGCATATGGGATATTCAAAAGAACAAGTGTTTGATGCCTTTCTTGAAGTTTCAAAAACTTCTGGTGATAAGGATATCTCATCA
CTCTGGCCAGCAGTCCTGTGTCATCTTCGAGAAGAACAAATTTATGGCTCGCGTCCTGTGACTCAAACTTCGCAGAATGGTGAGGTCCATCCTTGTGGCA
GTCAGAGCAATGAAATGGGTACAACTTGGGATCATACAAATAGGGTCAATGCTTGTTCCACAACCTCGCCAATTAACTTGAGAGGTCACTCGTCAAATTT
GTCAAGTTTGGATGCCCCTCGACCAAATATGATTGTCTTGCGTATGCCACCACTTGGTGTCGGGGAGAGGTTTGAGGATGCATATGAAGTCCTCCTTGTA
TTAGATGATCGTGAGCAGTTTGCAGTACATGGGTCAAGAGGCAGGAAACTTATCCATGGCATCAGCAAAGAGCACAGAATAAAAGTAGAGATCAGGCGGT
TACCAGTTGGAGATGCGATCTGGATAGCTCGCCACAAATATAATCTCGATGAATACGTTCTGGATTTTGTTGTTGAGAGGAAGGATGTTGGTGACTTGCT
TTCATCAATTAGGGGTAGTCGGTATAGAGACCAGAAATTGAGGCTTCAGAGATGTGGGCTTAAGAAGTTGATTTATCTTGTTGAAGGAGATATAAACATT
TGCGAAGGTGCTGAAAGCATAAAAACCGCCTGTTTCACTACAGAGATTCTGGAGGGATTTGATATCCAGAGAAGTGCTAGTTTACCTGATACAGTGAAGA
AGTATGGCCATCTTACCAAGTCCATTTCTGGATACTACAACTCACAGTCAATGAGTGATCAAGGCAACCAACTGGGCACCTGCCCTAGTTATCGTGATTT
CATCAAGAGGTGTGAAGAGCTTGAAAAGGTGACCATCAGTGATGTGTTTGCTATCCAACTCATGCAGGTTCCTCAAGTGACGGAGGAAGATGCCATGGCT
GTGGTTGATCTTCACCCGACGCTTCTGTCTCTCGCCCGTGCTTATTCTCTTCTTGAAGGAGACTTAAAAGCACAAGAAGAGATGCTTCAGAAGAAGAGCA
ACAACATTGTGAGTGGAGCTGCTAGCAAACACATTTTCCAGTTAGTATGGGGCCAATGA
AA sequence
>Lus10039566 pacid=23164986 polypeptide=Lus10039566 locus=Lus10039566.g ID=Lus10039566.BGIv1.0 annot-version=v1.0
MANRVRVVCPENEELASCLLQKKTEMAGSPKGLSPKLDMTLSKAYTSVCCAKTPIETPKQFSKLKGIGSWLVKQMESFFKDASISLEPEDLPVKGKRGRA
KKRYVPQKNTAAYALLITLYRGTSNGNEFMRRQELIDATEVSGLSQGPIGPEKGKGKPSQFGSSGRDWYSGWSCMTTLISKGLVVKSSSPAKYMLTQEGR
DVAKECLARSCMVDPVQTIAGAEDSGNLDIINITDDDPVQLQPTPPEVTIRSEDLSGQERSVDVPPQSLERFLHMGYSKEQVFDAFLEVSKTSGDKDISS
LWPAVLCHLREEQIYGSRPVTQTSQNGEVHPCGSQSNEMGTTWDHTNRVNACSTTSPINLRGHSSNLSSLDAPRPNMIVLRMPPLGVGERFEDAYEVLLV
LDDREQFAVHGSRGRKLIHGISKEHRIKVEIRRLPVGDAIWIARHKYNLDEYVLDFVVERKDVGDLLSSIRGSRYRDQKLRLQRCGLKKLIYLVEGDINI
CEGAESIKTACFTTEILEGFDIQRSASLPDTVKKYGHLTKSISGYYNSQSMSDQGNQLGTCPSYRDFIKRCEELEKVTISDVFAIQLMQVPQVTEEDAMA
VVDLHPTLLSLARAYSLLEGDLKAQEEMLQKKSNNIVSGAASKHIFQLVWGQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30870 ATMUS81 ARABIDOPSIS THALIANA MMS AND U... Lus10039566
[exp]
0 1
AT1G79350 EMB1135 embryo defective 1135, RING/FY... Lus10001836
[exp]
2.0 0.8571
AT5G44740 POLH Y-family DNA polymerase H (.1.... Lus10036237
[exp]
2.8 0.8088
Lus10036951
[exp]
5.7 0.7768
AT3G13670 Protein kinase family protein ... Lus10042455
[exp]
5.7 0.8200
AT2G37290 Ypt/Rab-GAP domain of gyp1p su... Lus10014020
[exp]
6.3 0.7979
AT4G32050 neurochondrin family protein (... Lus10032403
[exp]
8.8 0.8100
AT1G10520 AtPol{lambda} DNA polymerase {lambda}, DNA p... Lus10030831
[exp]
9.5 0.8060
AT5G25150 TAF5 TBP-associated factor 5 (.1) Lus10024447
[exp]
10.2 0.8099
AT5G15170 TDP1 tyrosyl-DNA phosphodiesterase ... Lus10018371
[exp]
11.8 0.7897
AT4G02560 HD LD luminidependens, Homeodomain-l... Lus10040921
[exp]
13.4 0.7966

Lus10039566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.