Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51930 483 / 9e-170 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 255 / 3e-80 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 237 / 1e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 234 / 2e-72 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 231 / 8e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 230 / 1e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 226 / 4e-69 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 218 / 1e-66 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 210 / 1e-62 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 203 / 4e-61 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024180 [exp] 716 / 0 AT3G51930 494 / 2e-174 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 243 / 9e-76 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 236 / 5e-73 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 234 / 2e-72 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 234 / 2e-72 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 229 / 1e-70 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 226 / 1e-68 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006460 [exp] 216 / 9e-66 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 211 / 1e-63 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202700 [exp] 570 / 0 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 565 / 0 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 257 / 7e-81 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 256 / 7e-81 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 241 / 7e-75 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 241 / 9e-74 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 237 / 1e-73 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 238 / 3e-73 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 233 / 2e-71 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 230 / 3e-71 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10039568 pacid=23165201 polypeptide=Lus10039568 locus=Lus10039568.g ID=Lus10039568.BGIv1.0 annot-version=v1.0 ATGCTCCAACATCATACCATCAACAAAATCCAATATGGCGCCTCCCATTACATATCCCCTCTCCACCAAGAACCCACCATCCCTCTTTCCACTCCTTCAA CTCCATTGCTCTCCGAATCAGACAGAAGCTTCCTCCAACTCTCCACCACCAGCAGCGACCTCAGCGACGAAGAGAGCCCTTCTCAATCTTTCCGTTTCGC TTCAACCACTCCGACCAAATCTCTATCCGGGTCGTCGTCCTGCTCCTCGTACAGGTCTCTGGCGGCTCTTTCCGGCCACGTGGGCTCTATTTCCTGCCTG GCACTTTGCGGCGAGTTTATCCTAAGCGCTTCGCAGGGCAAAGACATAATCGTATGGCAGCAGCCTGATATGAGGATGTTCACCAAGTTCGGCCAGGGAG ATGGATCGGTGAAGGCTTTGGTTTCGATCGGGAACAAGGTTTTCACGGCGCATCAAGACAGCAGGATCCGCGTGTGGAAAGTTTCGAGGAGTTCCGAAAA CGTATTCAAGCTGCTAGACACAATGCCTACAAGAAAAGACTACTTGGGAAAGTTCATGAAGCAGAGTAATTACGTCCAGACGAGAAGGCACCATAAAAAG CTCTGGATTGAACACGCCGATAGCATTTCCTGCTTAGCAGCTAGCAGCGGATTGATCTACTCCGGCTCATGGGATAAGACGCTTAAGGTCTGGAGGGTTT CTGATCTCAAGTGCCTGGAATCGATCAAAGCTCATGACGATGCAATTAATGGGATTGCAGCTTGTACAGGATCAGGAGGAGGAATGGTTTATTCAGCTTC TGCAGACGGAAATATCAAAGCTTGGGGGAAGGAGAGCCCAAATAATAAGGCTCATTCGTTGAAGGGGATTCTGGAGGGGCATAAGGATGTGTCGTTCAAT TCGGTGATTGTTTCGGAAGATGGGAAGTGGGTTTACGGAGGAGGGTCAGATGGGTATGTGATGGGATGGGAAGGGAGGGAGGAAATGGTAAGGTGGGAAT TGGTGTGTGAGGTGAAAGCTCATGAGATGGCTGTTCTGTGTATGTGTATGGTTGGCGGGTTGGTGTTCACTGGTTCAGCTGATAAGAGTATTGGGATATG GAAGAGGGAAGCTTTCGGGAAGCTGTTGAAGATTGGAATGATTTCAGGTCATGAAGGGCCTGTCAAGTGCTTGCAAGCATCGAGCAGTAATGTTGGCGGT GGGTTTTTGCTGTACAGTGGTGGACTTGACAGGAGCCTTAGGGTTTGGTGGGTTCCTAGCAGCCGGCAGGAGGAGGAGAGGAGTTGTTCCAAGTCCTTAA CGTTGTGA
AA sequence Show only first row Show all	>Lus10039568 pacid=23165201 polypeptide=Lus10039568 locus=Lus10039568.g ID=Lus10039568.BGIv1.0 annot-version=v1.0 MLQHHTINKIQYGASHYISPLHQEPTIPLSTPSTPLLSESDRSFLQLSTTSSDLSDEESPSQSFRFASTTPTKSLSGSSSCSSYRSLAALSGHVGSISCL ALCGEFILSASQGKDIIVWQQPDMRMFTKFGQGDGSVKALVSIGNKVFTAHQDSRIRVWKVSRSSENVFKLLDTMPTRKDYLGKFMKQSNYVQTRRHHKK LWIEHADSISCLAASSGLIYSGSWDKTLKVWRVSDLKCLESIKAHDDAINGIAACTGSGGGMVYSASADGNIKAWGKESPNNKAHSLKGILEGHKDVSFN SVIVSEDGKWVYGGGSDGYVMGWEGREEMVRWELVCEVKAHEMAVLCMCMVGGLVFTGSADKSIGIWKREAFGKLLKIGMISGHEGPVKCLQASSSNVGG GFLLYSGGLDRSLRVWWVPSSRQEEERSCSKSLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	0	1
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	3.7	0.9510
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	6.3	0.9429
AT4G33590			unknown protein		Lus10041131 [exp]	7.1	0.9492
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	8.1	0.9306
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10034032 [exp]	8.8	0.9446
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	9.2	0.9450
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	9.4	0.9418
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	9.5	0.9440
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	10.7	0.9478
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	11.4	0.9468

Compare expression of checked genes

Lus10039568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.