Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08550 696 / 0 ABI8, ELD1, KOB1 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) AT3G57200 616 / 0 unknown protein AT2G41451 580 / 0 unknown protein AT3G61030 114 / 9e-27 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 113 / 3e-26 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024181 [exp] 803 / 0 AT3G08550 684 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10018036 [exp] 624 / 0 AT3G57200 705 / 0.0 unknown protein Lus10042032 [exp] 599 / 0 AT3G57200 681 / 0.0 unknown protein Lus10000243 [exp] 269 / 5e-88 AT3G08550 255 / 3e-83 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024182 [exp] 198 / 4e-61 AT3G08550 114 / 2e-30 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G022700 [exp] 749 / 0 AT3G08550 749 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.003G202900 [exp] 729 / 0 AT3G08550 699 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.016G041900 [exp] 660 / 0 AT3G57200 744 / 0.0 unknown protein Potri.006G045500 [exp] 587 / 0 AT3G57200 646 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039569 pacid=23165199 polypeptide=Lus10039569 locus=Lus10039569.g ID=Lus10039569.BGIv1.0 annot-version=v1.0 ATGCCGAATCCCCACCATCTTCACGCGCCGCTCCGGCCATCGCAGTCATCTTCCTCGACGGCGCAATCCTTTGCCTCGAAGCTGATCCTCCTCCTCACCA TACTTCCTCTCTCTCTGGCAGCTTTGGCCTTCGTTCTGCAATGGAAGGGAGAAGGGGGAGGACTCCTCACCGACCCGGCCTCCGTCACAGCACGTTGGGC TCCTCAGGGCTCTAATAACAATCACGAGGTGTTCCCGGGGATGGAAGCCTCTGCTGCATCTCTGCTGTCTCCTAAACCCCATCATCAGTCATCTGATTGT TTAAGTCTTGCCAAGAGTGGCTCTCCTTCTTTTCCTTATTTTCGGGATTGGAAGTTCGATTTCGATGCCAATTTGAAGCCCAAGATCTGTGTTACTACAA GTACTTCAGCTAGCCTAGATCAGATTCTTCCGTGGATGTTCTACCATAAGGTTATTGGGGTTTCAACCTTTTACTTGTTTGTTGAAGGGAAAGCAGCCTC ACCAGGCGTGTCTAAAGTTCTTGAATCCATCCCTGGCGTTAAAGTTATTTACAGAACAAAAGAGCTAGAGCAGCAACAAGCTAGAAGCCGTATTTGGAAT GAGACATGGCTGTCGAGTTTCTTCTACAAACCATGCAACTATGAGCTATTTGTGAAGCAATCTCTCAACATGGAGATGGCTATTGTGATGGCCAGGGATG CAGGCATGGATTGGATACTTCACCTTGACACCGATGAACTCATACATCCTGCTGGTTCTAGCGAATATTCTTTGAGGCAGTTACTTCTTGATGTTCCTGG AGATGTGGATATGGTTATCTTTCCAAACTATGAAAGCAGCATTGAACGAGATGATATCAAAGACCCTTTTGGAGAGATTTCCATGTTCAAGAAAAATTAC GACCACCTACCAAAGGATACATATTTTGGCATGTACAAGGAATCCACTCGTGGTAATCCCAATTACTTCTTGACGTACGGGAATGGGAAGTCTGTTGCTC GGGTTCAGGAACATCTTCGTCCAAATGGTGCACACAGATGGCACAATTATATGAAAACTCCCAACGAAGTGAAGCTGGAAGAGGCTGCTGTGCTACATTA CACTTATGCCAAATTTTCAGACTTGACTTCTAGGCGTGATCGATGTGGCTGTAAACCAACAAAGGACGATGTCAAAAGATGCTTTATGTTGGAATTTGAC AGATCTGCCTTCATTATCGCTTCGACTGCAACAGAGGAAGAAATGCGGAATTGGTATCGTGAACACGTTGTTTGGGGTGACAAGGATCTGAAGCTGAAGC TATTAAGGAAGGGCATTTTAACTCGGATATATGCTCCTATGGCGATCATACAGGGTCTAAGAGAGTCTGGTGTTTTTAGTTCTATCATTGCATCGGCTCC AGCCGTTATTTCAAAGGACCAGTTTTTAGCATCAGTTGACAGCAGCAACTCAACAAGAGTCTCTGAATCTGTATCCTCAAAAAAGATGGCCAAAAGCAGC TCACTGGACCAGGCAACTGCTAGGAAGGTCTTGAACTTCGACGCTAACGCATTCCATGAAGCAGCCGTTCCTCCATTGCCTCCCCCAGCTGCAATTGACG AATTGATTTCAGCTTAA
AA sequence Show only first row Show all	>Lus10039569 pacid=23165199 polypeptide=Lus10039569 locus=Lus10039569.g ID=Lus10039569.BGIv1.0 annot-version=v1.0 MPNPHHLHAPLRPSQSSSSTAQSFASKLILLLTILPLSLAALAFVLQWKGEGGGLLTDPASVTARWAPQGSNNNHEVFPGMEASAASLLSPKPHHQSSDC LSLAKSGSPSFPYFRDWKFDFDANLKPKICVTTSTSASLDQILPWMFYHKVIGVSTFYLFVEGKAASPGVSKVLESIPGVKVIYRTKELEQQQARSRIWN ETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGSSEYSLRQLLLDVPGDVDMVIFPNYESSIERDDIKDPFGEISMFKKNY DHLPKDTYFGMYKESTRGNPNYFLTYGNGKSVARVQEHLRPNGAHRWHNYMKTPNEVKLEEAAVLHYTYAKFSDLTSRRDRCGCKPTKDDVKRCFMLEFD RSAFIIASTATEEEMRNWYREHVVWGDKDLKLKLLRKGILTRIYAPMAIIQGLRESGVFSSIIASAPAVISKDQFLASVDSSNSTRVSESVSSKKMAKSS SLDQATARKVLNFDANAFHEAAVPPLPPPAAIDELISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	0	1
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	1.7	0.9003
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	5.9	0.8621
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10041069 [exp]	6.6	0.8635
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10015525 [exp]	8.0	0.8533
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	8.5	0.8390
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	9.3	0.8671
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	10.0	0.8481
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	11.6	0.8263
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	12.7	0.8577
AT1G68260			Thioesterase superfamily prote...		Lus10031959 [exp]	14.2	0.8674

Compare expression of checked genes

Lus10039569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.