Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14900 395 / 1e-130 EMB3120 EMBRYO DEFECTIVE 3120, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000244 [exp] 756 / 0 AT3G14900 627 / 0.0 EMBRYO DEFECTIVE 3120, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390600 [exp] 444 / 5e-150 AT3G14900 491 / 4e-168 EMBRYO DEFECTIVE 3120, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039570 pacid=23165308 polypeptide=Lus10039570 locus=Lus10039570.g ID=Lus10039570.BGIv1.0 annot-version=v1.0 ATGTTGTCATTTCAGAAGTTGAATTTGCCAGCAGAAATGGAGCTCTGCTTCTCCAAAACCCTAAACCCTACTTCCTCCAATCCATTTCTTCGTCCCATCA AATCTGGAGCCCTAAATCTTACTTCCCCCTTCCTCCCAGGACTCTCTTTTCCACTTCAGCGACATCCACCTGGTCTCTCTTCCAGCCGGAATCCATCTCG ACGTCTTGAAGTCCGCGCATTAGCCGGCCGGAGCAAGAAGAAACCAGGGGGCGCGTCCACGGGGAGAATCGAAGGAAATGCAGAGATTCGCCGGAAGATA AAGCAGAGCGCGAAGCGGAAGACATGGATGATACCCGGTCCCGACTTCTACAAGCAGAAGGATTCCCACATGAACCACCCGGACAACTTCAGCGAAGATG AGCTCAACTTGATCGGGCTAGGGTACGATAGGATGGTCCGGTTCATGGAGAAGGACGATCCTAATCTCAAGCACCCGTACGACTGGTACGAAGTGGCAGT GGATTTCGGAGAGAGGCTGGATCAGTTGGATAAAGATGTTGGATTGAGAAGGTACTGGGTGTTTGTGAGGCATCCTAGATGGAAATTGCGAGAGCTTCCA TGGCAGCAATGGACGTTGGTGAGCGAGGTTGTGATTCAAGCAAGCAAAGATCATAGGATTGATAAATGGAATTTGATGGGTAGGTTAGGGAACAAAGCTC GAAAATTGATCGGCCAGTGTGCTGCTTGGTTCAGGCCTGATATAATATATGTCAAGAAACCAGTATTCCAGTGCAGGTTTGAGCCGCAAGAGGACTTTCT CGGAGCTCTGGTACCACTGTTGGACCCCGAAACGGAGAAGGATTGTATGTTCGAACTGAAAAGTGAAGGTGGAGGAGGGGATCCAACTTTCGTGACTTAT TTTGAAGGGTTGTGCAAGATTGTAAGGATTAATCAGAAGGCGTACGTGGATGATGTGGTGAATGCTTACGAGAAGATGAGCGACGAGAGGAAATCACAGT GTTTAGAGTTTCTCTTGGAGAATCATCCTATCCAGTTGCTGCATCCTTACACGAAAGAGTGGAAGGTTAAGTTGGAGGAGATGGAACTGGGATGTGACGC TCCAGACGAGGAAGAGGAAGATGGGAATTACAACAAAGAGGATATGGAGTTCACAGAATGGATAGAGGATGATGGCGAGGATGTCGTTATGGAGATGGAT GAAGAAGATGATGCTGAATTGAGTGGGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGAGTCTGCTGTAGAAGAGGAGGATGAGGAGTACTGGGAAGA GAAGATTGAAAAGGCAATGAGCAGCGGGGAAGCAATGGAGGAGATAGTGAAAGAGAGTGTAGAGAGGAGTGCCGCAATGTACAAGAAGCAACTGAAAGGC ATGGAGAAAGAAGGAATAAGCGATGATGATGGGGGAGATGAGACAGCACTAAGAGGAAAAAGGGCCAAAGTGAGTCCAGAAGAATGGAAGATCGCTGGGT TCGGTAGATGGAGGAAGAGGATAAAGAAGACAAAAATCCCTCCTGAGTTATTCTTGAGAGCTGCGGTTAGACCTTTTACTTACAGGAATCTTGTTAAAGA GATCGTCCTGACCAGACATGCCATTTTGGATGGTGACATTGGTAGGAAGTACTGA
AA sequence Show only first row Show all	>Lus10039570 pacid=23165308 polypeptide=Lus10039570 locus=Lus10039570.g ID=Lus10039570.BGIv1.0 annot-version=v1.0 MLSFQKLNLPAEMELCFSKTLNPTSSNPFLRPIKSGALNLTSPFLPGLSFPLQRHPPGLSSSRNPSRRLEVRALAGRSKKKPGGASTGRIEGNAEIRRKI KQSAKRKTWMIPGPDFYKQKDSHMNHPDNFSEDELNLIGLGYDRMVRFMEKDDPNLKHPYDWYEVAVDFGERLDQLDKDVGLRRYWVFVRHPRWKLRELP WQQWTLVSEVVIQASKDHRIDKWNLMGRLGNKARKLIGQCAAWFRPDIIYVKKPVFQCRFEPQEDFLGALVPLLDPETEKDCMFELKSEGGGGDPTFVTY FEGLCKIVRINQKAYVDDVVNAYEKMSDERKSQCLEFLLENHPIQLLHPYTKEWKVKLEEMELGCDAPDEEEEDGNYNKEDMEFTEWIEDDGEDVVMEMD EEDDAELSGDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDDESAVEEEDEEYWEEKIEKAMSSGEAMEEIVKESVERSAAMYKKQLKG MEKEGISDDDGGDETALRGKRAKVSPEEWKIAGFGRWRKRIKKTKIPPELFLRAAVRPFTYRNLVKEIVLTRHAILDGDIGRKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10039570 [exp]	0	1
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10000244 [exp]	1.0	0.9625
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Lus10010027 [exp]	2.4	0.7963
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	4.6	0.7572
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10021053 [exp]	10.1	0.7912
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	12.6	0.7818
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	13.6	0.7398
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	15.2	0.7830
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	15.9	0.6999
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10006425 [exp]	16.2	0.6953
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	20.0	0.7721

Compare expression of checked genes

Lus10039570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.