Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005314 [exp] 100 / 6e-27 AT4G31560 81 / 1e-20 high chlorophyll fluorescence 153 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039571 pacid=23165020 polypeptide=Lus10039571 locus=Lus10039571.g ID=Lus10039571.BGIv1.0 annot-version=v1.0 ATGGCGACTCTGCAATTCCGGCCAGGTTTATCCACTCCGGCACCGCGTTTCTACGCGTCACGCGCCACCGCCAAGCCGGCGGTGGAGANNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNGAACACTCTTCGAGGGAGAGGGGGGGCGGCGGGGGGAGGGGGGGGAGGTGGTGGAGGGTGGGGGGCCGGGGAGGGCCGCC GAGCAGCAGCAGCTACGTTTTCGCGTTCGCTTTACCGTTCAGCCTTCTAATCTTCACGATCTTCACTTCTGTAAGGATTTCGGATAAGCTGGACGAAGAG TACCTGGAGGAGCTTGAACTGAATGAGGCGATCATGGAAGCAGAAGGAATCAAGTATGAAGAAGATGAAGATGAAAATATTGATGTCCAAGTCTCGCCGG AGAAGGAGGAGGAAGAGGAAGTGCAGATGCCACAACCTGCGTTGAGTGGGAGCCGAATTCGCAACCGGCCGAAACGGCAGAACAATCCAAACGTCGAAGT TGCAGCAATCCTGCAGCTGCAAGAATGGATTATCGACGATCCAGTTGTTGCGTTGAGTTCCATACTCAACTGCCCCAAAGAGATCTTTTGCATTAGCCGC AACAGGAGAAGAAACATAAGCAGTATCGGCACAGTCGGGAACATGTGA
AA sequence Show only first row Show all	>Lus10039571 pacid=23165020 polypeptide=Lus10039571 locus=Lus10039571.g ID=Lus10039571.BGIv1.0 annot-version=v1.0 MATLQFRPGLSTPAPRFYASRATAKPAVEXXXXXXXXXXXEHSSRERGGGGGRGGRWWRVGGRGGPPSSSSYVFAFALPFSLLIFTIFTSVRISDKLDEE YLEELELNEAIMEAEGIKYEEDEDENIDVQVSPEKEEEEEVQMPQPALSGSRIRNRPKRQNNPNVEVAAILQLQEWIIDDPVVALSSILNCPKEIFCISR NRRRNISSIGTVGNM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	0	1
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10002349 [exp]	1.0	0.9408
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	2.4	0.9227
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	7.2	0.8725
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	7.3	0.8763
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	8.7	0.8646
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10008411 [exp]	8.8	0.8983
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	9.5	0.8674
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	9.5	0.8812
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10021883 [exp]	12.6	0.8504
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10013089 [exp]	13.2	0.8250

Compare expression of checked genes

Lus10039571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.