Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51940 123 / 1e-31 unknown protein AT5G03990 110 / 5e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016362 [exp] 217 / 1e-67 AT5G03990 125 / 5e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G021100 [exp] 206 / 1e-63 AT3G51940 143 / 2e-38 unknown protein Potri.016G042400 [exp] 140 / 2e-39 AT5G03990 138 / 9e-39 unknown protein Potri.006G045900 [exp] 120 / 7e-32 AT5G03990 137 / 1e-38 unknown protein Potri.006G262800 [exp] 80 / 1e-17 AT5G03990 87 / 1e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039572 pacid=23165196 polypeptide=Lus10039572 locus=Lus10039572.g ID=Lus10039572.BGIv1.0 annot-version=v1.0 ATGGATGTGTTTGAAATACTTGTAGAATACGTCAATGATGGTGTGCCTTTGTGGGAGAAGGAGTTCTGTTTTAATGTTGGTGCAGTACCATGGCATCGAG TTGTAGATGCTAAGAATTTCTCTTCCTGCGAGAGTCAGATACTCAAATGGGATGACTCGGCTGGGGAAGAGGCATTTCATAATGCCAAAAGCCGCTATTG GGCGCTGCTCAACAATCTCCCATGTGACATACCTCGACCTAACCCGGATGAATGTACTGATGAAATCGACTGGAATCCTTATATTGACCCTGAACTGATC CGGGAACTGGAGCAAGAGTATTATGCTCCAGTTGAGGATGAAAGCAACTACGGCCGTAGAAAGAAAAAGACCAGGCGGAACTTGTACTCTGATCGGCCAG AAAGTTGCAGTGTTAATCCTACAGATGCTGTGAATCCTTGGCGGACCCAGAATTTAGTGCAGCAGAGCAGTCTTGTTGTTGATATGAAAGGTCAAGAAGG ATGGGGAGATCGGTGGGAAGATAATAAATTGAAAGACACAGATGATGTAAATAATAAAGATGATAACCCATGGGAGAAGGCCTGTCATCAGGAAGATGAA GATGTAAATGGGAACACAGCTTGGGGAGTTGCAGGCGATAATTCGTGGGGATGGAACGGAGCTAGTGGTGGCCAGAAAGATGTAGGATGGAGAAATAATA GCAGCAGTAAAGCAGGGACGAGGAAACAATGGGATGATAAAGGAGAAGGAACTAAAGCATCAGAGTACAGGAAGCCAAATGGAGGATGGGGAACCTGGAA AAGGGATTCCTGGAGGAATGAAGGCTGGGGACATCAACATAATAAAACAGGATATGGAACATATGGGTTTGAAGGGGATGATTATCGAGCAGGCAGTGGG GAGCATTGGAGGGATGGAAGAAGTAAGAAGAGGGTAAGTTTTGGTTATAGCTAA
AA sequence Show only first row Show all	>Lus10039572 pacid=23165196 polypeptide=Lus10039572 locus=Lus10039572.g ID=Lus10039572.BGIv1.0 annot-version=v1.0 MDVFEILVEYVNDGVPLWEKEFCFNVGAVPWHRVVDAKNFSSCESQILKWDDSAGEEAFHNAKSRYWALLNNLPCDIPRPNPDECTDEIDWNPYIDPELI RELEQEYYAPVEDESNYGRRKKKTRRNLYSDRPESCSVNPTDAVNPWRTQNLVQQSSLVVDMKGQEGWGDRWEDNKLKDTDDVNNKDDNPWEKACHQEDE DVNGNTAWGVAGDNSWGWNGASGGQKDVGWRNNSSSKAGTRKQWDDKGEGTKASEYRKPNGGWGTWKRDSWRNEGWGHQHNKTGYGTYGFEGDDYRAGSG EHWRDGRSKKRVSFGYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51940			unknown protein		Lus10039572 [exp]	0	1
AT1G36730			Translation initiation factor ...		Lus10010980 [exp]	2.4	0.8572
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	3.7	0.8933
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	3.9	0.9074
					Lus10024538 [exp]	4.5	0.8693
AT5G59460			scarecrow-like transcription f...		Lus10004969 [exp]	8.9	0.8711
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	10.6	0.8562
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	12.4	0.8774
AT2G17350			unknown protein		Lus10026564 [exp]	14.7	0.8569
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10043083 [exp]	21.2	0.8169
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	21.6	0.8358

Compare expression of checked genes

Lus10039572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.