Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13460 180 / 8e-52 IQD11 IQ-domain 11 (.1) AT5G03960 87 / 2e-18 IQD12 IQ-domain 12 (.1) AT2G26180 85 / 1e-17 IQD6 IQ-domain 6 (.1) AT3G52290 82 / 1e-16 IQD3 IQ-domain 3 (.1) AT2G43680 82 / 2e-16 IQD14 IQ-domain 14 (.1.2.3) AT1G18840 80 / 9e-16 IQD30 IQ-domain 30 (.1.2) AT3G22190 79 / 1e-15 IQD5 IQ-domain 5 (.1.2) AT1G72670 78 / 1e-15 IQD8 IQ-domain 8 (.1) AT5G03040 79 / 2e-15 IQD2 IQ-domain 2 (.1.2.3) AT4G00820 79 / 2e-15 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005315 [exp] 640 / 0 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10027059 [exp] 86 / 6e-18 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10025593 [exp] 86 / 7e-18 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10013522 [exp] 84 / 4e-17 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10019916 [exp] 84 / 4e-17 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 83 / 5e-17 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 83 / 6e-17 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10014870 [exp] 82 / 3e-16 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10010104 [exp] 80 / 7e-16 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G021000 [exp] 258 / 2e-81 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.006G046000 [exp] 115 / 3e-28 AT5G03960 197 / 1e-58 IQ-domain 12 (.1) Potri.016G042700 [exp] 93 / 2e-20 AT5G03960 180 / 2e-52 IQ-domain 12 (.1) Potri.011G153400 [exp] 89 / 9e-19 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.006G226600 [exp] 87 / 3e-18 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G448100 [exp] 86 / 1e-17 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.006G131100 [exp] 84 / 2e-17 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 83 / 4e-17 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 83 / 4e-17 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.013G127200 [exp] 83 / 6e-17 AT3G59690 447 / 5e-153 IQ-domain 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10039573 pacid=23165123 polypeptide=Lus10039573 locus=Lus10039573.g ID=Lus10039573.BGIv1.0 annot-version=v1.0 ATGGGAAGAAAGCCATGGAACTGGTTCAAGAGGCTCTTTTCTTCTGATGCACAGTCCAGTTCAGAAAAGAAGGAGAAGAGAAGCAAATGGTTGTTCTTTG CTGTTAAGAACAAGCTACCCTCCATTACAGCAAAATTGGATGATGAGAAAGAAGAGGATCGGGAAAAAGTGACTGTTGAAGTTACTTGGCTATCTCAAAC TGAAAAGCAGCAAACTTCACCTGTGAAACCCCAGGATCATGCTGCTGCTGATTCTGTCGATGGCTTTTCGATTCTTCGGTACCAGAGGGATCTTCAGGAA TTTGCTGCCACTAGGATTCAATCTGCATTTAGGGGCTTCCTTGCAAGGAAGGCTCTGAGGGCACTGAAGGGGATTGTAATGCTTCAAGCAATGATACGTG GGAGAAACGTGCGGCGGCAGGCCATCACAACCCTGAAATGCCTTCAATCCCTTGTGAATATACAGTCACAAGCATCAGCAGCAGTAGCATCATCCAGCTC AAGGAGGAATAGTTTTCCAATGGTTGATTATAATGAGACTAGTTGGCAGTTTGATGAGCCAAACAAGCAGTTGCAGTACCACAAAGACAAGATAATTAAG GTGGACAAGAACAGCCAGAGAAGATGGGACAGCAGCATCTTGACAAAGGAAGAGGCAGATGCTTTGTTTATGAATAAGAGAGAGGCTGCAATCAAGAGGG AAAGGATCAAAGATTACTACTCCTTTTGCCACCGGAGTTCATCGGATTCGGATCGAAGCAAACCGGATGGGAAGTTCAGGCAGTGGCTGGTTGAATGGGA GGACAAACAAATTGACAAAGAAGTGGTTGAAGAAGAAGAAGAACAGGTAGGAGAAGACAGAGCTAAACACCTGAAGCTGAGAGGCCTAAGGAGACAATAC CAGAACCACACTGAGGAACTAAACTCGCCGCCCATGTCAAGAAGATCATTGCAGCAAAGGAAGCAACCATCGTGCTCATACATGGCGGCAACTGAGTCTG CTAAAGCCAAAGTGAGATCACTAAGCTCGCCACGAGTCAGGCCAGGATTAGTTGAGGCTTATAACTCGGATGGTAACTCTCCATACAAGAACAAGAGGTT GTTTCTTGCAGCAGCATGTAATGGACGTAACAGCAGCAGCTACTATTGTTATAATAACCAGCAGCAAAGGTCTCCAAGCTTGAAGAGCCTTCCTGCTGGT GGTGTGAGATATAATAACAACAGGACACAGCTGAAAGATCTCAGCATCGACTCTGGCTGCTCTTTCAAGACTTGGGATCCTCAATGTGCATTTTAA
AA sequence Show only first row Show all	>Lus10039573 pacid=23165123 polypeptide=Lus10039573 locus=Lus10039573.g ID=Lus10039573.BGIv1.0 annot-version=v1.0 MGRKPWNWFKRLFSSDAQSSSEKKEKRSKWLFFAVKNKLPSITAKLDDEKEEDREKVTVEVTWLSQTEKQQTSPVKPQDHAAADSVDGFSILRYQRDLQE FAATRIQSAFRGFLARKALRALKGIVMLQAMIRGRNVRRQAITTLKCLQSLVNIQSQASAAVASSSSRRNSFPMVDYNETSWQFDEPNKQLQYHKDKIIK VDKNSQRRWDSSILTKEEADALFMNKREAAIKRERIKDYYSFCHRSSSDSDRSKPDGKFRQWLVEWEDKQIDKEVVEEEEEQVGEDRAKHLKLRGLRRQY QNHTEELNSPPMSRRSLQQRKQPSCSYMAATESAKAKVRSLSSPRVRPGLVEAYNSDGNSPYKNKRLFLAAACNGRNSSSYYCYNNQQQRSPSLKSLPAG GVRYNNNRTQLKDLSIDSGCSFKTWDPQCAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	0	1
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	1.0	0.9500
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	1.4	0.9450
AT1G74160			unknown protein		Lus10021148 [exp]	1.7	0.9203
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	2.2	0.9086
					Lus10008292 [exp]	4.1	0.8691
AT4G18060			SH3 domain-containing protein ...		Lus10004584 [exp]	4.4	0.8640
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	4.5	0.9170
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	4.9	0.8999
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	6.9	0.9063
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	7.7	0.8627

Compare expression of checked genes

Lus10039573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.