Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63440 523 / 0 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 497 / 3e-172 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT1G75450 333 / 1e-108 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G21482 285 / 4e-90 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G56970 278 / 9e-88 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 264 / 2e-83 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 261 / 3e-81 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G13470 85 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005317 [exp] 714 / 0 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10016363 [exp] 577 / 0 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10018039 [exp] 406 / 1e-139 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031046 [exp] 397 / 1e-135 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 388 / 2e-132 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10042035 [exp] 364 / 2e-122 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 331 / 2e-109 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10024289 [exp] 333 / 1e-108 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 278 / 3e-87 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G020900 [exp] 597 / 0 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.003G203600 [exp] 593 / 0 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.016G044100 [exp] 509 / 2e-177 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 499 / 2e-173 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.002G030500 [exp] 342 / 2e-112 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 340 / 1e-111 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 292 / 5e-93 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 266 / 7e-83 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 238 / 5e-72 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.003G203900 [exp] 98 / 9e-24 AT5G13470 104 / 1e-28 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10039574 pacid=23165160 polypeptide=Lus10039574 locus=Lus10039574.g ID=Lus10039574.BGIv1.0 annot-version=v1.0 ATGAAATATCAACCTGCTAGCTTCTTCAAACGCAATACAATGTTTTTCTTAAGAAGCGTATCAATCTTGATCCTGAGCTGCATATTAGTAACAGTAAATC CTTGTTTCCCTACAAAGCATTCTTCTCTCAATACACTCTCCCTAGACGGCCATTTCGCATTTGATCAAGTTCACCATGCAGCTAAAGACTTCGGCAATCG GTTTCAGATGTTTCCTTTGGCGGTTCTTCATCCAAAATCTGTTGCAGATATTGCGACTACCGTAAAGCATATTTGGCAGATGGGCCCTCGTTCTCAACTT ACGGTGGCAGCCAGAGGCCATGGCCACTCACTTCAGGGTCAGGCACAAGCCCACCAGGGAGTTGTTGTAAACATGGAGTCACTGCAGAGTCATAAAATGG AAGTTTTCACAGGGAACCAACCATATGTAGACGTCTCAGGCGGGGAGTTATGGATAAATATTCTGACAGAATCTCTGAAATATGGGTTGACCCCAAAATC ATGGACAGACTATCTACATTTGACTGTTGGAGGTACTTTATCCAATGCTGGGGTCAGCGGCCAGGCGTTTCGGCATGGACCTCAAATAAGTAATGTTCAT CACCTGGAAGTCATTACAGGAAAAGGAGACGTGCTTAATTGCTCGGAGAAACAGAATGACGACCTCTTCCACAGTGTTCTCGGCGGACTTGGTCAGTTTG GCATCATAACACGGGCAAGAATATCCCTGGAACCAGCACCTGATATGGTGAAATGGATCAGAGTTCTCTACTCGGATTTCGCCACATTTACCAGTGACCA GGAGCATTTAATATCTACTAGGAACACATTCGACTATATTGAAGGATTTGTGATCATCAATAGGACTGGCCTCCTGAATAACTGGAGATCATCCTTCAAT CCTCAAGATCCAGTTCATGCTAGCCAGTTCAAATCTGATGGAAAAACTCTCTACTGCCTGGAGTTGGCCAAATACTTCCGCAAAGATAAGAGAGGTGCGG CACATGAGCAAGTCATGGACCTGTTGTCTCAGTTACGTTACATTGCATCCACACTTTTCATATCAGAAGTTCCATACATAGACTTCTTGGATAGGGTTCA CATCTCAGAGGTTAAACTGCGGATGCATGGGTTTTCATCAAGTCAGCCGCAAGGAAGTGCTCCACCGCAATCAACGTATGAGAAACTTCCTGATGCTTCG CTTCTTCTGAACTCTCCATCTATTTCGGCTCTGAGAGGAAGTGATCATGCTTCTTGGGTTCGACCTGTTGTGACTGAGAATACATCGCGCAAAAGAGACT CGACTGGTCTACCTTCCTCTTCCACTCTTAGCAAATTGCCCAAGGGGAGCTTGCTGCACGGAAAGAATGTTCCCGATACTGCTAGCGGTATCTTGGTTCC TCCTCAACTAAGAGGAAGGAGCAATGTTGTAACAGAAGATATAGGAAAGCTGTTTGTAAAAAGACCTGCAGTTTAA
AA sequence Show only first row Show all	>Lus10039574 pacid=23165160 polypeptide=Lus10039574 locus=Lus10039574.g ID=Lus10039574.BGIv1.0 annot-version=v1.0 MKYQPASFFKRNTMFFLRSVSILILSCILVTVNPCFPTKHSSLNTLSLDGHFAFDQVHHAAKDFGNRFQMFPLAVLHPKSVADIATTVKHIWQMGPRSQL TVAARGHGHSLQGQAQAHQGVVVNMESLQSHKMEVFTGNQPYVDVSGGELWINILTESLKYGLTPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVH HLEVITGKGDVLNCSEKQNDDLFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFTSDQEHLISTRNTFDYIEGFVIINRTGLLNNWRSSFN PQDPVHASQFKSDGKTLYCLELAKYFRKDKRGAAHEQVMDLLSQLRYIASTLFISEVPYIDFLDRVHISEVKLRMHGFSSSQPQGSAPPQSTYEKLPDAS LLLNSPSISALRGSDHASWVRPVVTENTSRKRDSTGLPSSSTLSKLPKGSLLHGKNVPDTASGILVPPQLRGRSNVVTEDIGKLFVKRPAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10039574 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016519 [exp]	3.5	0.8279
					Lus10040164 [exp]	4.4	0.7450
AT5G18130			unknown protein		Lus10020284 [exp]	5.0	0.7954
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10005936 [exp]	7.1	0.7972
AT5G18130			unknown protein		Lus10005702 [exp]	8.5	0.7967
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021640 [exp]	9.5	0.7747
AT5G35732			unknown protein		Lus10006404 [exp]	12.4	0.8066
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10017291 [exp]	12.4	0.7711
AT5G04000			unknown protein		Lus10018038 [exp]	13.6	0.7845
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031833 [exp]	16.7	0.7816

Compare expression of checked genes

Lus10039574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.