Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51950 400 / 2e-133 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G21100 256 / 1e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 242 / 1e-71 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G63450 197 / 3e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 192 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 140 / 9e-36 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 69 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 44 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 43 / 0.0005 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52980 0 / 1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005319 [exp] 951 / 0 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10019044 [exp] 303 / 4e-95 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 238 / 2e-74 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 233 / 3e-69 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 223 / 3e-65 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 222 / 2e-64 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006379 [exp] 218 / 5e-64 AT2G05160 467 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10009964 [exp] 192 / 2e-55 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027350 [exp] 189 / 4e-53 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204300 [exp] 618 / 0 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 523 / 7e-179 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 338 / 1e-107 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 322 / 1e-101 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050600 [exp] 292 / 2e-90 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 287 / 2e-88 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G221100 [exp] 152 / 2e-39 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.014G165500 [exp] 150 / 9e-39 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 71 / 1e-13 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Potri.001G196500 [exp] 44 / 0.0003 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10039575 pacid=23165092 polypeptide=Lus10039575 locus=Lus10039575.g ID=Lus10039575.BGIv1.0 annot-version=v1.0 ATGGATGGATATGAAGCAACAAGGACAGTGTTCTCTAGAATCAAGAGCCTAGACGCAGAGAATGCTTCGAAAATCATGGGTCTCCTCCTGATACAAGACC AAGGTGACAAGGAGATGATCAGATTAGCTTTCGGCTCGGAAACTCTGCTTCACTCAGTCATACTCCAAGCCAAGAAAGAGCTTGGACTCTCTTCTTCTCC TCCTCCTGCAAGCTCTGCATCCAGTCCTTCCTCTGCTTCTTCCCCTGTTCTCTTGTCTAGGCAGACTTCATCCCTCAACCCTGCCTCTCTTCCCTTTTAC TCCAGAGCAAGTTCTGACCCGGTTGATGATTTTCAGCTCCATGACCACTTGTCTTTCCTCAACGAACCCAGCTCCGGATACCTTTCCTCTGCAAAAAGAT CAGATCTTTCTTATTGGGGAGGAGGAGGGGCTTTTAGCCACAGGAAGAGCTGCTCAGTGAGTGATGTTTTTGGTGCTGAGGATCTAAATTCTGCAGGGAT TGGGTGGAGGCCTTGTCATTACTTTGCTAGAGGGTTTTGTAAGAATGGAAGCAATTGCAGGTTTGTTCATGGTGATGGGTCTGATGCTGCAAGCTTGGTG GGTTCACCTGACGGAAAGATAGATATGATGATGGAGCAGTCCCATGAAATGCTTAGATCTAAGAGATTCGCTGCTGCTGCTGCTTCTTTGATGATGGGTG ATGATATGCACAAATTTGGGAGATATAGGCTTGATAGAAACGATATGGTGAACCCAGCTTCTAGGCAGATCTACTTGACCTTCCCAGCAGACAGCACTTT CAGAGAAGAAAATGTGTCCAATTATTTCAGCATTTATGGGCCAGTTGAAGATGTGAGGATTCCATATCAGCAGAAGAGGATGTTTGGGTTTGTGACATTT GCTTACCCTGAGACAGTGAAGTTAATCTTGGCAAAAGGGAATCCACACTTTGTTTGTGATGCAAGAGTTCTTGTCAAGCCTTACAAGGAGAAACCCAAAA TTCTAGACAAGAAGCAGTACCAACACCAGCAAGTTGATGGTGGGGAATTTTCACCTTGCGGTACCCCAACTGGCCTAGATGCAAGAGAACCCTTTAACCA CCCACTTGGTATAAGAATGTCTAGCAAAACTCAAAACTTGTTGTGGAGGAGGAAGCTGGAGGAACAAGCTGATTTGCAGCAAGCCCTTGAGCTTCAAAGT AGGAGGCTAATGGGTTTGCAGCTTCTTGATGTGAATAAACAACACCAAAGGGCTCTTTCCACTGGCAGCCCTATCCCTTCCCCAACACACCGTCCTCAAT CTCCCAATCTCTTCCATCCACTACGCAGCAGCTCCATGAAATTTCAAGATAACTGCAGCAGCAGCAGTTTGCCAGCTATATCTATTGTCCCACCTGAGAG ACAATGGCTGACATCAATTGATGCTTCTGGCAAAGAATCTAATGGCCATGTAGGGAAAGAAAACTCTCATTATGAAAGTAATGATTTGCTGCAAGAAAGT TTTGAGCACATCCTTCCTGATAGTCCCTTTGCATCTCCTGCCAAAGATACTGGGGAATATTTCTCTCCTGCTGCAGATGCTTCTCCACTGGACATGGGAA GCTTCAGATCATTCAATTGTCAAATGCCTAGGTTTTTATCAAGAGTTGGAGCCATTGTTGGTGGTGGTATGTATGGAGGGACAGGGGTTTCAACCTGCCC TGTTGGAATTTAG
AA sequence Show only first row Show all	>Lus10039575 pacid=23165092 polypeptide=Lus10039575 locus=Lus10039575.g ID=Lus10039575.BGIv1.0 annot-version=v1.0 MDGYEATRTVFSRIKSLDAENASKIMGLLLIQDQGDKEMIRLAFGSETLLHSVILQAKKELGLSSSPPPASSASSPSSASSPVLLSRQTSSLNPASLPFY SRASSDPVDDFQLHDHLSFLNEPSSGYLSSAKRSDLSYWGGGGAFSHRKSCSVSDVFGAEDLNSAGIGWRPCHYFARGFCKNGSNCRFVHGDGSDAASLV GSPDGKIDMMMEQSHEMLRSKRFAAAAASLMMGDDMHKFGRYRLDRNDMVNPASRQIYLTFPADSTFREENVSNYFSIYGPVEDVRIPYQQKRMFGFVTF AYPETVKLILAKGNPHFVCDARVLVKPYKEKPKILDKKQYQHQQVDGGEFSPCGTPTGLDAREPFNHPLGIRMSSKTQNLLWRRKLEEQADLQQALELQS RRLMGLQLLDVNKQHQRALSTGSPIPSPTHRPQSPNLFHPLRSSSMKFQDNCSSSSLPAISIVPPERQWLTSIDASGKESNGHVGKENSHYESNDLLQES FEHILPDSPFASPAKDTGEYFSPAADASPLDMGSFRSFNCQMPRFLSRVGAIVGGGMYGGTGVSTCPVGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	0	1
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	1.4	0.9337
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	1.7	0.8761
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	2.0	0.9050
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	3.7	0.8455
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	4.2	0.8468
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	6.3	0.8587
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	6.3	0.8616
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	7.1	0.8215
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	9.8	0.8001
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	9.9	0.8264

Compare expression of checked genes

Lus10039575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.