Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 93 / 2e-20 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G44400 51 / 1e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 49 / 4e-06 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44670 47 / 1e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44480 46 / 3e-05 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 46 / 4e-05 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G33300 44 / 0.0002 ADR1-L1 ADR1-like 1 (.1.2) AT5G45200 43 / 0.0004 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 42 / 0.0005 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 42 / 0.0007 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 440 / 2e-143 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 149 / 3e-39 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 138 / 1e-35 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 95 / 5e-21 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 86 / 1e-17 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002737 [exp] 81 / 3e-16 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 77 / 5e-15 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10008687 [exp] 75 / 1e-14 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10007261 [exp] 70 / 1e-12 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261600 [exp] 159 / 6e-43 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 119 / 5e-29 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.004G194800 [exp] 115 / 1e-27 AT3G14470 622 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 105 / 2e-24 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.004G196100 [exp] 103 / 8e-24 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015200 [exp] 101 / 4e-23 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1) Potri.001G022800 [exp] 100 / 5e-23 AT3G14470 168 / 1e-43 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 97 / 1e-21 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 94 / 1e-20 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 93 / 3e-20 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039577 pacid=23165028 polypeptide=Lus10039577 locus=Lus10039577.g ID=Lus10039577.BGIv1.0 annot-version=v1.0 ATGATGGCACTAGATGTGCTGGAGATCAAGTCCTGTGCTGAGATGTACTTATCGCAAGATAAGTCTGGTTTCGACCAACTTCGGTATCTCAAGTATATGA AGATCAAGAACTGCGAGAGTCTCGTTTCGTTGGTTAAAGGGGAAGAAGGGCTTTTGCCTTGCAATGTTGAAGTGCTGAGGCCTTTCCAGGAACTAGTTTG CCGTCCAGCATCACATATTTATGGATCAGAGATTGCCAGTTACTGGAGCCTGTACCAGAGGGAGTTTTTCGTGACAGCAATGACTGCAGCAAAAGAAGTT GCCACATCTAAAGATGCAGTACATAGAAAACTGCCTCTCTGTAGGCTTCTCCAACTGGTGAATTACCTGTCCCACTCTGAAGACCATCTCAAGCAGTTAC TTCACGACTCGATCGTTAGACTCGCTGGATACCGGTTTGGCAATTTAACGTACATGGAAATAACAGACTGCCCTTGGCTAGAGAAGTTCCCAGAAGGAGG GTTGTCATCAATACCATCTCTCACCTGTTTAACAATCTCAGGTTGTCTGAATCTAAATAATTTGCCTGATCGGATGCAGAATCTATTGTCCCTTCAACAT TTTGAGCTCCATAAATGTCCAAGTGTGGTATCATTTCCAGAAGGCGGGTTGCCTCCAAACCTGACAACCCTAATGATCAGGAACTGCAAGAATCTTTCAC AGCCTATTTCCAGTTGGGGACTCCACAGGCTCAAATCTCTGAAAAGAATCAAACTTGAAGGTACAAGTCCCAGTACAGACGCAGTATCTTTCCCAGATGA AGAAGGGTTGCTGCTTCCTTCTTCGCTTACCCTGCTTTGGATCCATAGTTTCGGCAACCTGAAATGCATCTCCAAGGGACTGAAGAATCTGAAGGTCCTT GAGAATCTGTGGATCCGGAACCGTCCTAAACCCAAGTCCTTGCCTGGGAGATGCCTCCCTGCTACACTTGGATTCTTGGAGATCAATGCATACCCTCTCT TGAAGAAAAGGTTCCCGAAAAGGGCAAAGCATTTCCGCATGAATCCCTTGCGTCGTGGTGGATTCGACAATGTCAGGCATGCCCTTGAACCCTGA
AA sequence Show only first row Show all	>Lus10039577 pacid=23165028 polypeptide=Lus10039577 locus=Lus10039577.g ID=Lus10039577.BGIv1.0 annot-version=v1.0 MMALDVLEIKSCAEMYLSQDKSGFDQLRYLKYMKIKNCESLVSLVKGEEGLLPCNVEVLRPFQELVCRPASHIYGSEIASYWSLYQREFFVTAMTAAKEV ATSKDAVHRKLPLCRLLQLVNYLSHSEDHLKQLLHDSIVRLAGYRFGNLTYMEITDCPWLEKFPEGGLSSIPSLTCLTISGCLNLNNLPDRMQNLLSLQH FELHKCPSVVSFPEGGLPPNLTTLMIRNCKNLSQPISSWGLHRLKSLKRIKLEGTSPSTDAVSFPDEEGLLLPSSLTLLWIHSFGNLKCISKGLKNLKVL ENLWIRNRPKPKSLPGRCLPATLGFLEINAYPLLKKRFPKRAKHFRMNPLRRGGFDNVRHALEP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039577 [exp]	0	1
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	2.4	0.8966
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	5.1	0.9009
					Lus10041941 [exp]	6.3	0.8845
					Lus10015488 [exp]	8.1	0.8856
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	9.5	0.8825
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025413 [exp]	9.8	0.8785
AT1G11760		MED32	unknown protein		Lus10030983 [exp]	11.1	0.8482
					Lus10027893 [exp]	11.2	0.8812
AT1G31660			unknown protein		Lus10027134 [exp]	13.7	0.8519
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	15.0	0.8675

Compare expression of checked genes

Lus10039577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.