Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63460 1328 / 0 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT1G18830 881 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G58230 72 / 6e-13 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 72 / 1e-12 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 68 / 1e-11 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G11160 67 / 4e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 67 / 4e-11 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 65 / 2e-10 TAF5 TBP-associated factor 5 (.1) AT5G27945 62 / 9e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G33260 61 / 4e-09 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016373 [exp] 1706 / 0 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019752 [exp] 1535 / 0 AT3G63460 1147 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005323 [exp] 1279 / 0 AT3G63460 885 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005322 [exp] 739 / 0 AT3G63460 473 / 2e-156 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10016374 [exp] 203 / 5e-61 AT3G63460 181 / 4e-54 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019751 [exp] 201 / 3e-60 AT3G63460 181 / 2e-54 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10033460 [exp] 72 / 8e-13 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 72 / 9e-13 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 71 / 2e-12 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055400 [exp] 1587 / 0 AT3G63460 1351 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.001G260900 [exp] 1543 / 0 AT3G63460 1347 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.002G216200 [exp] 75 / 1e-13 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 74 / 1e-13 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 71 / 1e-12 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 69 / 1e-11 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.001G094500 [exp] 62 / 2e-09 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.006G263400 [exp] 62 / 3e-09 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.001G026800 [exp] 61 / 3e-09 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G020200 [exp] 60 / 9e-09 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF07304 [flax] [poplar] SRA1 Steroid receptor RNA activator (SRA1)
Representative CDS sequence Show only first row Show all	>Lus10039578 pacid=23165125 polypeptide=Lus10039578 locus=Lus10039578.g ID=Lus10039578.BGIv1.0 annot-version=v1.0 ATGGCATGTATCAAGTCGGTAAACAGATCGGCGTCCGTGGCCTTTGCGCCGGACGCTCCGTATATGGCTGCCGGGACGATGGCCGGTGCTGTGGATCTGT CCTTCAGCTCCTCGGCCCACATCGAGATTTTCAAGCTTGATTTTCAATCGGAGGATCACGAACTCCCCGTGGTAGGGGAGTCGCAGAGCACCGAGAGATT TAACCGTATTGCTTGGGGCAAAAATGGATCCGGTTCCGAACAGTATGGCCTTGGACTCATTGCTGGTGGCCTCGTTGACGGGACCATTGGCATCTGGAAT CCTTCTGCGTTGATCCGTTCTGAGCCAAATGAAGGAGCTTTTGTTGCTACTCTTTCAAATCACAGAGGCCCCGTTCGTGGCCTTGATTTTAATTCCTTCA CCCCAAATTTACTTGCATCGGGTGCTGATGATGGTGAGATTTGCATCTGGGATTTGGCATCGCCTGCGGATCCTTCACACTTCCCACCTCTGAAGGGCTC TGGCTCTGCCCATCAAGGTGAGATCTCATATGTTTCTTGGAACAGCAAGGTCCAGCATATATTGGCTTCTACTTCACATAATGGAATCACTGTGGTTTGG GACTTGAAGAAGCAAAAAAAAGTTATATCTGTTTCAGATCCAATGGGTAGGAGGAGCTCTGTTGTGCAGTGGCACCCTGAAGTTGCCACTCAGCTTGTAG TTGCATCAGATGATGATAGCTCTCCTACGTTAAAGCTTTGGGATATGCGAAATACATTGGAACCTGTCAAAGAGTTTGTTGGACACACCAAAGGTGTAAT TGCTATGGCATGGTGTCCCAGTGACAGCTCCTATTTGCTCACTTGTGCTAAAGATAATCGAACTATCTGCTGGAACACTGTAACTGGAGAGATTGCTTCT GAATTGCCTTCAGGCAACAATTGGAACTTCGATGTACATTGGTACCCTAAAATTCCAGGAGTTATAGCAGCCTCTTCTTTTGATGGAAAGATTGGACTTT ACAATATTGAGGGATGCGATCATTATGGGATTGGAGAGACTGACTTCGGAGCAGTAAAATTAAGAGCCCCAAAGTGGTACAAAAGGCCTGCTGGAGTGTC CTTTGGATTTGGAGGAAAGCTTGTGTCATTTAATCCCAAATCATCAACTTCAGGGCCTTCACAGGTTCTTTTGCACAGCCTGGTAACAGAACAATCTTTA GTGACTCGGTCGTCTGAATTTGAAACTGCAATAAACAATGGGGAGAAATCATCACTTAAGTCGTTATGCGAAAGGAAATCTCTGGAGTCTGAATCTGAGG ATGACGAACAGACATGGGGCTTCCTCAAGGTTATGTTTGAAGAAGATGGGACTGCTAGGTCAAAGATGCTTAACCACCTTGGTTTTAGTTTGCCCGTTGA AGAAAAACCTGCAGTTGTTGATGATCTTAGCCAGGAGATCAATGCCCTTCAGCTAGCCGACGTTGCAACAGAGAAAGAGGGATATGAGGACCAGAGACAG TCTGTCATGTTTGCTGGAGATGACGGAGAAGATTTCTTTAATAATCTTCCGAGCCCTAAAGTCGATACCCCTGTGTCAGTGTCAGCTGAAGCCACTTATC CCCACATTGACGAAGAAACCAGACACGAAGCTGATGAAATGGAAGAGAGTGCTGACCCATCATTTGATGATGCTATTCAGCGTGCTTTGGTGGTGGGAGA TTATAAAGGGGCAGTTGCACAATGCATGTCTGCAAATAAGAAGGATGATGCTTTGCTTATTGCACATCTTGGTGGACCTGCCTTGTGGGAGAAAACACGT GAGCAGTGTCTTAAAATGAATCGGTCACCTTACATGAAGATTGTCTCTGCGATGGTGAACAATGACCTCTTGAACCTGGTTAACACAAGGCCTCTGAAAT ATTGGAAGGAAACAGTTGCCCTTCTATGCACATTTGCTCAAAATGAGGAATGGAGTATGCTCTGTGATGTGCTTGCTTCAAGACTAATGGCTGCTGGTAA TACTTTGACTGCGACTCTTTGTTATATATGCGCTGGAAATATAGACAAGACTGTTGAAATTTGGTCAAGAAGTTTGTCATGTGACCGTGAAGGAAAATCT TATGTTGACCTTCTTCAGGATTTGATGGAGAAGACTATTGTTTTCGCTTTGGCAAGTGGACAAAAGCGCTTTAGTGCATCTCTGTGCAAGCTTGTTGAGA AATATGCTGAGATTTTGGCAAGTCAGGGGCTGTTAACGACTGCTATGGAGTACCTGAAACTCCTGGGTTCTGATGAATTATCTCCTGAGTTGGTTGTCTT AAGAGATCGCATAGCACTTTCTGCAGAGCCTGCCACAGAAGAACATACGACTACCGCTTACGAGAATTCACAATTTCAGAGCGAACAACCCAGTTTCAGT GTGGCTAATGCGTCCCATTCGTTTTATCCGGAAACTGCACCATCACACTTGCATCAGCATGGTGTTCCTAGCTCCACGTATGCAGAAAATTATCAGCAGA GTCTTGGCTCTTCTTACGGAACAGGATATGGAACAACACCATATCAACCTGCTCCTCAAGCCAGTCCTTACCAGCCTGCTGTACCTTCTCAAATGTTTGT TCCATCCCAGGCACCTCAGATCCCTCAGTCAAATTTTGCTCCACCACCTCCTAGCAGTCAACAAGCTGTAAGGACTTTTGTCCCTTCAAGCGTTCCTATC GTCAGAACTGCAGATCAGTACCAGCAGGCTACTTTGGGATCGCAGTTGTATCCTGGGGCTTCAAATCCTGCGTTCCAACCTGTACAGCCTCCTGCTCCTT CTCAAGCCCCAGTTGCAGGAATCCCAAATGTTACGACTCCCACATCAACTCCAGTGGGATTTAGACCTGTACCAAATTCTGGTCACAGACCAAGCATGAA TTCATACCAACCATCCGCTCCTAATCAGATAGCGTCATCGCAACCAGCTGTGGCACCGGCTGCTCCACCTCCTACCGTACAGACAGTTGATACTTCAAAC GTTCCTGGTCACCATAAACCTGTGGTCGCAACCTTGACAAAACTGTTTACCGAGACATCAGAAGCTTTGGGAGGCGCACGGGCAAACCCAGCTAAGAAGA GAGAAATCGAAGATAATTCAAAGAAAATCGGTGCCTTGTTTGCTAAACTCAACAGTGGTGATATCTCCAAGAACGCTTCAGACAAGCTTATTCAGCTATG TCAGGCATTAGACAAAGGCGACTTCAGCACAGCCCTGCAAATTCAGGTGTTACTCACAACAAGCGAGTGGGACGAGTGCAACTTCTGGTTGGCGACCCTT AAACGTATGATCAAGTCTCGACAAGTGGCTGGTGTAAGAAGTTGA
AA sequence Show only first row Show all	>Lus10039578 pacid=23165125 polypeptide=Lus10039578 locus=Lus10039578.g ID=Lus10039578.BGIv1.0 annot-version=v1.0 MACIKSVNRSASVAFAPDAPYMAAGTMAGAVDLSFSSSAHIEIFKLDFQSEDHELPVVGESQSTERFNRIAWGKNGSGSEQYGLGLIAGGLVDGTIGIWN PSALIRSEPNEGAFVATLSNHRGPVRGLDFNSFTPNLLASGADDGEICIWDLASPADPSHFPPLKGSGSAHQGEISYVSWNSKVQHILASTSHNGITVVW DLKKQKKVISVSDPMGRRSSVVQWHPEVATQLVVASDDDSSPTLKLWDMRNTLEPVKEFVGHTKGVIAMAWCPSDSSYLLTCAKDNRTICWNTVTGEIAS ELPSGNNWNFDVHWYPKIPGVIAASSFDGKIGLYNIEGCDHYGIGETDFGAVKLRAPKWYKRPAGVSFGFGGKLVSFNPKSSTSGPSQVLLHSLVTEQSL VTRSSEFETAINNGEKSSLKSLCERKSLESESEDDEQTWGFLKVMFEEDGTARSKMLNHLGFSLPVEEKPAVVDDLSQEINALQLADVATEKEGYEDQRQ SVMFAGDDGEDFFNNLPSPKVDTPVSVSAEATYPHIDEETRHEADEMEESADPSFDDAIQRALVVGDYKGAVAQCMSANKKDDALLIAHLGGPALWEKTR EQCLKMNRSPYMKIVSAMVNNDLLNLVNTRPLKYWKETVALLCTFAQNEEWSMLCDVLASRLMAAGNTLTATLCYICAGNIDKTVEIWSRSLSCDREGKS YVDLLQDLMEKTIVFALASGQKRFSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSDELSPELVVLRDRIALSAEPATEEHTTTAYENSQFQSEQPSFS VANASHSFYPETAPSHLHQHGVPSSTYAENYQQSLGSSYGTGYGTTPYQPAPQASPYQPAVPSQMFVPSQAPQIPQSNFAPPPPSSQQAVRTFVPSSVPI VRTADQYQQATLGSQLYPGASNPAFQPVQPPAPSQAPVAGIPNVTTPTSTPVGFRPVPNSGHRPSMNSYQPSAPNQIASSQPAVAPAAPPPTVQTVDTSN VPGHHKPVVATLTKLFTETSEALGGARANPAKKREIEDNSKKIGALFAKLNSGDISKNASDKLIQLCQALDKGDFSTALQIQVLLTTSEWDECNFWLATL KRMIKSRQVAGVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	0	1
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	3.2	0.9195
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	3.5	0.9389
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10015475 [exp]	5.9	0.8927
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	9.8	0.8266
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	10.6	0.8916
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	11.8	0.8940
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	12.4	0.9004
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	13.4	0.8756
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	16.0	0.8955
AT1G19835			Plant protein of unknown funct...		Lus10034509 [exp]	16.1	0.8881

Compare expression of checked genes

Lus10039578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.