Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28420 223 / 1e-74 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) AT1G80160 147 / 3e-45 GLYI7 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT1G15380 139 / 9e-42 GLYI4 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT2G32090 47 / 9e-07 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT5G57040 43 / 4e-05 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005324 [exp] 363 / 2e-129 AT2G28420 245 / 2e-83 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10014480 [exp] 149 / 8e-46 AT1G80160 244 / 1e-83 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10030070 [exp] 149 / 1e-45 AT1G80160 247 / 7e-85 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10025971 [exp] 148 / 6e-45 AT1G15380 165 / 3e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10014269 [exp] 146 / 4e-44 AT1G15380 166 / 2e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10006122 [exp] 44 / 9e-06 AT2G32090 199 / 3e-67 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10010552 [exp] 44 / 1e-05 AT2G32090 197 / 3e-66 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10021573 [exp] 40 / 0.0002 AT5G57040 163 / 2e-51 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10017158 [exp] 40 / 0.0006 AT5G57040 254 / 7e-87 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055500 [exp] 235 / 2e-79 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.001G171600 [exp] 147 / 5e-45 AT1G80160 270 / 6e-94 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.005G117000 [exp] 146 / 2e-44 AT1G80160 166 / 2e-52 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G009000 [exp] 146 / 4e-44 AT1G80160 190 / 8e-62 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G062400 [exp] 145 / 5e-44 AT1G80160 261 / 2e-90 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G015100 [exp] 144 / 2e-43 AT1G15380 167 / 7e-53 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.004G223300 [exp] 144 / 3e-43 AT1G80160 187 / 1e-60 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G129200 [exp] 140 / 2e-42 AT1G80160 225 / 1e-76 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.010G087000 [exp] 42 / 6e-05 AT2G32090 189 / 3e-63 Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10039579 pacid=23165269 polypeptide=Lus10039579 locus=Lus10039579.g ID=Lus10039579.BGIv1.0 annot-version=v1.0 ATGCAGGTGCAAGAGGAGAGGATTACTAGTAATAGCTACAGCAACGGCTACCATCATGATCATATTGATAATGAGGAGGAAGAACAAGTTAAGGATAAGG AAGGGCCTCCTCCAATGATGGCGCTGAACCATGTGTCCAGGCTGTGCAGAGACGTCCAGAAATCCCTTGATTTCTACACCAAAGTCCTTGGGATGGTCTT GATTGAGAGGCCTGGTGCTTTCAAATTCGACGGAGCTTGGCTCTACAACTATGGGGTTGGCATTCACTTGGTCCAGGCTAAAGATGAAGATAAGTTGCCT GACAAAGACCGGGACCTTGATCCCATGGATAACCACATCTCTTTCCAGTGCGAAGATATGGAAGAGATGGAGAGGCGGCTCAAGGAGTTTGATGTCAAGT ACATGAAGAGGACCATAGAAGAAGAGAATAACGGGAGTAAGATTGACCAAATGTTCTTCGACGACCCAGATGGGTTCATGATCGAGATATGTAACTGCGA GAATCTCAAGCTGGTTCCTGCTGGCTCCTTGGGCAAAATTAGAATCCCTGTCGATCGTCATACTCCTCCTCTTGAGCTCTCCACCCATGGAGGCCGCGAT CGCCCTCATGAGCACGCCGATTAA
AA sequence Show only first row Show all	>Lus10039579 pacid=23165269 polypeptide=Lus10039579 locus=Lus10039579.g ID=Lus10039579.BGIv1.0 annot-version=v1.0 MQVQEERITSNSYSNGYHHDHIDNEEEEQVKDKEGPPPMMALNHVSRLCRDVQKSLDFYTKVLGMVLIERPGAFKFDGAWLYNYGVGIHLVQAKDEDKLP DKDRDLDPMDNHISFQCEDMEEMERRLKEFDVKYMKRTIEEENNGSKIDQMFFDDPDGFMIEICNCENLKLVPAGSLGKIRIPVDRHTPPLELSTHGGRD RPHEHAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28420		GLYI8	glyoxylase I 8, Lactoylglutath...		Lus10039579 [exp]	0	1
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10004274 [exp]	1.4	0.8816
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10039462 [exp]	11.0	0.8930
AT1G71820		SEC6	SEC6 (.1.2)		Lus10036425 [exp]	21.4	0.6873
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025913 [exp]	54.9	0.6524
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	84.6	0.6622
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	101.5	0.6469
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	101.7	0.6469
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	102.0	0.6469
					Lus10003941 [exp]	102.2	0.6469
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	102.4	0.6469

Compare expression of checked genes

Lus10039579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.