Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13790 243 / 2e-80 MADS AGL15 AGAMOUS-like 15 (.1) AT3G57390 175 / 7e-54 MADS AGL18 AGAMOUS-like 18 (.1.2) AT3G61120 150 / 2e-44 MADS AGL13 AGAMOUS-like 13 (.1) AT1G24260 147 / 3e-43 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G09960 146 / 4e-43 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G58780 145 / 2e-42 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 144 / 4e-42 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT2G45650 144 / 5e-42 MADS AGL6 AGAMOUS-like 6 (.1) AT3G57230 140 / 2e-40 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 139 / 2e-40 MADS AGL21 AGAMOUS-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005325 [exp] 506 / 0 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10005302 [exp] 154 / 2e-45 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 151 / 2e-44 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 148 / 4e-43 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003125 [exp] 135 / 3e-39 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10005080 [exp] 136 / 1e-38 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10009481 [exp] 137 / 2e-38 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10021140 [exp] 135 / 2e-38 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10025719 [exp] 133 / 2e-38 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055700 [exp] 337 / 2e-117 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.006G048700 [exp] 236 / 8e-78 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.007G010800 [exp] 150 / 2e-44 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.012G132600 [exp] 147 / 1e-43 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.013G104900 [exp] 146 / 4e-43 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.011G075800 [exp] 145 / 2e-42 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G109601 [exp] 144 / 4e-42 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.014G074100 [exp] 144 / 5e-42 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.005G150501 [exp] 144 / 1e-41 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.015G098400 [exp] 142 / 1e-41 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10039580 pacid=23165098 polypeptide=Lus10039580 locus=Lus10039580.g ID=Lus10039580.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGAAAGATTGAGATCAAAAGGATTGAGAATGCAAATAGCAGGCAAGTCACCTTCTCCAAGAGGAGAACTGGGCTGCTTAAGAAAGCTCATG AGCTTTCCATTCTCTGTGATGCTGAGGTTGCTGTCATCATCTTCTCCAATACCGGCAAGCTCTTTGAGTTCTCTAGCTCTGGCATGAAGAGAACGCTTTC AAGGTATCATAAGTGTCTGGATTCGTCAGAGCCAGCCAAACCAGAACAGAAACTAGATATTCAGGCACAGAGTACCACCCCAAGCCACACTTTTCTTGTC CAGAAGCAAAATTCAAAGGAACTGGATGCTTTAAGAGAGGAAATTGCAAAGCTACAAACGAAACAAATGAGACTCTTGGGGAAGGACTTGAATGGCTTGA GCTTGAAAGAGTTGCAACAACTAGAACATCAATTAACTGATGGTTTATCATGTGTGAAAGATAAAAAGGAGCAATTGCTGATGGAGCACCTTGAGCTTTC AAGAGTTCAGGAACAACGAGCAAAGCTGGAGAATGAGACTTTGCGCAGACAGGTTGAAGAGCTTCGAGGCTTCTTCCCGTCGGCTGATCGTTCAGTGCCG AGTTACCTCGAGTTCCAGTCTATGGAACAAAAGAATTCCAGCATAACAACGAATGGCTGCATAAGTCCTGATGCAGCCTACAACTGCTCAACTGAGAAGG GAGATTCGGACACTACCTTGCATTTAGGGCTTCCAACCAATGTGTACCGCAAGAGGAAGGCACCGGAGACAGAAAGCTGCTCAACCGAATCCGAGAGTTA A
AA sequence Show only first row Show all	>Lus10039580 pacid=23165098 polypeptide=Lus10039580 locus=Lus10039580.g ID=Lus10039580.BGIv1.0 annot-version=v1.0 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAHELSILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYHKCLDSSEPAKPEQKLDIQAQSTTPSHTFLV QKQNSKELDALREEIAKLQTKQMRLLGKDLNGLSLKELQQLEHQLTDGLSCVKDKKEQLLMEHLELSRVQEQRAKLENETLRRQVEELRGFFPSADRSVP SYLEFQSMEQKNSSITTNGCISPDAAYNCSTEKGDSDTTLHLGLPTNVYRKRKAPETESCSTESES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	0	1
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	1.4	0.8472
AT5G60890	MYB	AtMYB34, MYB34,...	ALTERED TRYPTOPHAN REGULATION ...		Lus10015713 [exp]	1.7	0.8429
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	3.7	0.8814
AT2G33580			Protein kinase superfamily pro...		Lus10022489 [exp]	4.4	0.7784
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011082 [exp]	4.5	0.8387
					Lus10007681 [exp]	4.8	0.7678
AT5G02440			unknown protein		Lus10025345 [exp]	8.1	0.8212
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	8.5	0.7502
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	11.4	0.7612
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	11.6	0.8028

Compare expression of checked genes

Lus10039580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.