Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005326 [exp] 428 / 3e-151 AT1G01550 61 / 3e-10 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055800 [exp] 168 / 9e-50 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10039581 pacid=23165053 polypeptide=Lus10039581 locus=Lus10039581.g ID=Lus10039581.BGIv1.0 annot-version=v1.0 ATGGTACTCTTGATTCAAAAGATCAACAAGCTCTATTCCAAGCTGGAGAATATTAATCACCATCACAAGCAGCAAGATGATGCTCTCCCGTTACTAGGGG CAGCAGCTCTCCAAGCTTTCCGATCCGAAGTTTCTAACTTGGTCACCAATCTGTTGTTAACCACCCCAAACCCAGACGACACCCAACTCGTCCTGTCCCT CCCATGGCTCCGCAGCTGTTTCCAGCTCCTACCCATGATCAACCAGGCCTTCGCCAAGCTCGTGGTGGATCTCGACTATCCGATGAACAAGTGGCAAGAC AAATCCGTCCACCTATACCTCACCCACACCTTGAAATTGCTGGACCTTCTTAACTCCATAAGCTCTTCCATAGCTTCATTAGGCCAATCAAGACTCTCTC TGTCTCATGCTCTGTCCCAAGTCGTCAACGGATCGCCTTCTTCCTCTGCCGTGTTAAACCGGCTCAAGATGACGACAACAACCGCAACCCAGTTGGCCAA TTCGTTCAGGAAGGTCAAGGTTCATGAGGAAAAGGGTGATGGTGAGGTAAATAACGGATCTTTATGCGAGAGAGAGGCGATTATCCATGAAGCTTTGGTG GAAATGAAGAGTGCTGGATTCTGGGTTTCTTCAATACTTCTTGCTTGTTTGAGTGGAGATTCTAAAGCTTACTTGGAGGATCAATCCAGGAGGCCGGTTT CGATTGCTTGTTTGACCAGGATCGATTCCATCATGTTGGGATTTGTGAAAGAGAAAGGGATTGTGGCTAAAGAGGTTAAGGATTTGAATGATTCGGCTGC CATAATTGCTGCTGAGATTTCATCAAACAGAGGAGTAGGAGTTTTGGAGGTGGCAAGGGAGATGCAGAGGAAGCTGGAGGTGTTTGAGAAGCTGCTTGAT GGGTTAAGAACGGACGTGGATCGACTGTTTTCAGAGATCTTGACTGGAAGGAATGAATTGCTTCGGTGTTTTCGTCATGGAAATCATTAG
AA sequence Show only first row Show all	>Lus10039581 pacid=23165053 polypeptide=Lus10039581 locus=Lus10039581.g ID=Lus10039581.BGIv1.0 annot-version=v1.0 MVLLIQKINKLYSKLENINHHHKQQDDALPLLGAAALQAFRSEVSNLVTNLLLTTPNPDDTQLVLSLPWLRSCFQLLPMINQAFAKLVVDLDYPMNKWQD KSVHLYLTHTLKLLDLLNSISSSIASLGQSRLSLSHALSQVVNGSPSSSAVLNRLKMTTTTATQLANSFRKVKVHEEKGDGEVNNGSLCEREAIIHEALV EMKSAGFWVSSILLACLSGDSKAYLEDQSRRPVSIACLTRIDSIMLGFVKEKGIVAKEVKDLNDSAAIIAAEISSNRGVGVLEVAREMQRKLEVFEKLLD GLRTDVDRLFSEILTGRNELLRCFRHGNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	1.7	0.9067
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	2.6	0.8901
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	3.5	0.8909
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042996 [exp]	3.5	0.8968
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	3.9	0.8957
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	4.2	0.9045
					Lus10022031 [exp]	7.3	0.8855
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10033798 [exp]	8.4	0.8720
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10020389 [exp]	8.5	0.8763
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10029882 [exp]	8.9	0.8667

Compare expression of checked genes

Lus10039581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.