Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63470 372 / 2e-121 SCPL40 serine carboxypeptidase-like 40 (.1) AT2G24000 299 / 9e-95 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G52030 298 / 5e-94 F-box family protein with WD40/YVTN repeat doamin (.1.2) AT3G52000 285 / 2e-88 SCPL36 serine carboxypeptidase-like 36 (.1) AT5G08260 284 / 5e-88 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 282 / 1e-87 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G52010 280 / 2e-86 SCPL37 serine carboxypeptidase-like 37 (.1) AT2G05850 272 / 2e-83 SCPL38 serine carboxypeptidase-like 38 (.1) AT5G23210 268 / 9e-82 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G02110 254 / 5e-77 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005327 [exp] 840 / 0 AT3G63470 449 / 1e-154 serine carboxypeptidase-like 40 (.1) Lus10016377 [exp] 548 / 0 AT3G63470 501 / 2e-174 serine carboxypeptidase-like 40 (.1) Lus10019749 [exp] 546 / 0 AT3G63470 478 / 1e-165 serine carboxypeptidase-like 40 (.1) Lus10019748 [exp] 542 / 0 AT3G63470 471 / 2e-161 serine carboxypeptidase-like 40 (.1) Lus10019747 [exp] 541 / 0 AT3G63470 502 / 4e-175 serine carboxypeptidase-like 40 (.1) Lus10005328 [exp] 488 / 1e-167 AT3G52030 477 / 1e-167 F-box family protein with WD40/YVTN repeat doamin (.1.2) Lus10015382 [exp] 272 / 5e-83 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10010190 [exp] 270 / 1e-82 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10023505 [exp] 263 / 2e-80 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G056500 [exp] 355 / 5e-116 AT3G52030 475 / 1e-166 F-box family protein with WD40/YVTN repeat doamin (.1.2) Potri.001G261100 [exp] 344 / 6e-111 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G055900 [exp] 296 / 2e-92 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.007G072300 [exp] 291 / 6e-91 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.004G120100 [exp] 283 / 1e-87 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.009G056000 [exp] 267 / 2e-81 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.010G220100 [exp] 263 / 2e-80 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.005G091800 [exp] 263 / 4e-80 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.005G091700 [exp] 261 / 3e-79 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.008G041800 [exp] 257 / 5e-78 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10039582 pacid=23165164 polypeptide=Lus10039582 locus=Lus10039582.g ID=Lus10039582.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAGCCCTCCTCAACAACTGATCTCCTCCTTGCCATAATTTCGATTCTCGTCCTATCATTATCGTGTTTTCCGGCGCCGGCGGAATGCCGGA ACCAAGCCCAGAAGCTGAACAAGTTGCTCCAAGCAAAGATGAGGAACGAGGTCGATACGGCACCGTTTAAGGCAGTTGCATACGAGAAAATAGCTTCGAG ATTAGTGGATCTTCCTCCAGGTGGTGGTGGTGGTGGTTCCAAAAAGGACGACGATCTCATCGACCGGCTGCCAGGTCAGCCCGCCGTGACGTTCAAGCAA TACGGCGGCTACGTTAACGTGGACCCGGTGAACGGCAGGAACATGTATTACTACTTCGTTGAAGCACAGCATCCAAACAAGGACGAACTGCCTCTTGTTC TCTGGCTCAATGGAGGGCCTGGGTGCTCGTCTTTGGCATATGGAGCAATGACGGAGCTGGGCCCATTTAGAGTTGGCACCGATGCCAAAACTCTCTACGT CAATAAATATTCTTGGAACAAAGGAGAGAGCTATGCGGGCCACTACGTGCCTCAGCTAGCTCATACTATTCTCATGCATATGCTCGTCAACATCCTTGAC AGGTCGATCAACCTCAAGGGTATTATGGTCGGGAATGCGGTGTTAAATGATGAGACGGACAGCGAAGGGATGTACGATTACTTCCGGACCCACGGCATGG CATCACCGGAAGCAGTGGCGACGGTGGAGAAGTACTGTGATTTCTCGCCGGAGTTCAACGGGAATCAGACCGCGGAATGTAAAGCCGCCTACCAGGAAGT GCAGGTGTCAATCGCTCCCATCTTCCCTTACAACATCTACGTCGAAGACTGCCTTGCCTACAAGGGCCCCACCCTAAAGCCCCGACCTTTCTCCATAATA GAGTACGACGAGTGCAGCCCCGAGTACGTAGAGGAGTATCTGAATCGAGAGGAGGTGCAGAAAGCAATGCACGCAAATACCACAAACCTCCCATACCGTT GGACTGGTTGTACGGACAACATCAATTACAACCAGGCATCCACTACCGTCATGACGGACCTCCAATTCTTGTTGGCCAATAAGATTTCCGTCTGGATCTA TAGTGGTGACATAGACGCAATGGTGCCGTTTACTTCGACGCAGCTGGCGATCAAGACCATGAGTCTTACGGTGGAAACCAAGTTCCATCCTTGGTTCATT GGCGGACAGGTTGGAGGGTACACGGAGACGTACAAAGAAGGTTTTACATTTGCGACGGTGAGAGGGGCGGGGCATGAAGTTCCGAGCTACCAACCCTTGA GAGCGCTTTCACTTTTCATGCATTTTATTGGTGGCACGCCTTTGCCGAATATATGCATATGGAGGCGCAATGGTAAGAGAAGTATCTTTCCCTCCAAGGA AGGCACATTTAGCAAGGGCTCGTGTATGAGGTACTTTGATCCGGATGCTGTGGTAGGCTGTGAGGATGGTACTGCTCGTGTATTTGACATGTACAACAGA CAGTGTTCTTGTATTATCAAGATGCACCCGGAGGCTGTATCCTGTTTGTCCTTGAGCGACGACCAATTGATTCTGAGCGGTTCCTCTTTAGGAAGGATTA CAGTATCTGGTTTGTTATCTAACGAGAAGATAGCTCCACTCAGACCAACCGATACCACTGGTTCCAGCTTAGTATTCTGCGGAACTACTGCTGGCTATGC ATCATGTTGGGATCTTAGGAAGATGAGACGACTATGGGAAAGACGTGTTAGTTCAAATGTCGTATACTCTATGCATCACCTGCGTAATGACACATCAGCG CTCGTGGTTGGTGGAATAGATGGGGTTTTACGTGTTATTGATCAGGACACGGGAGAAGGTATTGCGAGGTATGTGATGGACCACGACTCGCATCCAACTA GTTTCAGATATCCGCATGGAGTAGGTGAACGAAGGCGTGCGAAACGTCTACCAAAAGGTACCCTTATCGATGGAGTCCCAAGAAGCGCTCGTCCTCCCAT TACATGCTTGGCAGTTGGGAGGGAGAAGGTTGTTACTACACACAATGGTACTCATATGAGACTTTGGAAGTTTTAA
AA sequence Show only first row Show all	>Lus10039582 pacid=23165164 polypeptide=Lus10039582 locus=Lus10039582.g ID=Lus10039582.BGIv1.0 annot-version=v1.0 MKKKPSSTTDLLLAIISILVLSLSCFPAPAECRNQAQKLNKLLQAKMRNEVDTAPFKAVAYEKIASRLVDLPPGGGGGGSKKDDDLIDRLPGQPAVTFKQ YGGYVNVDPVNGRNMYYYFVEAQHPNKDELPLVLWLNGGPGCSSLAYGAMTELGPFRVGTDAKTLYVNKYSWNKGESYAGHYVPQLAHTILMHMLVNILD RSINLKGIMVGNAVLNDETDSEGMYDYFRTHGMASPEAVATVEKYCDFSPEFNGNQTAECKAAYQEVQVSIAPIFPYNIYVEDCLAYKGPTLKPRPFSII EYDECSPEYVEEYLNREEVQKAMHANTTNLPYRWTGCTDNINYNQASTTVMTDLQFLLANKISVWIYSGDIDAMVPFTSTQLAIKTMSLTVETKFHPWFI GGQVGGYTETYKEGFTFATVRGAGHEVPSYQPLRALSLFMHFIGGTPLPNICIWRRNGKRSIFPSKEGTFSKGSCMRYFDPDAVVGCEDGTARVFDMYNR QCSCIIKMHPEAVSCLSLSDDQLILSGSSLGRITVSGLLSNEKIAPLRPTDTTGSSLVFCGTTAGYASCWDLRKMRRLWERRVSSNVVYSMHHLRNDTSA LVVGGIDGVLRVIDQDTGEGIARYVMDHDSHPTSFRYPHGVGERRRAKRLPKGTLIDGVPRSARPPITCLAVGREKVVTTHNGTHMRLWKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	0	1
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10015004 [exp]	2.4	0.9315
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	2.6	0.9468
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10043157 [exp]	3.7	0.9459
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	4.2	0.9117
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	4.9	0.9080
AT5G07740			actin binding (.1)		Lus10017556 [exp]	4.9	0.8954
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	6.0	0.9278
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	8.1	0.9193
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	8.8	0.9139
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10020273 [exp]	9.8	0.9135

Compare expression of checked genes

Lus10039582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.