Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039584 pacid=23165314 polypeptide=Lus10039584 locus=Lus10039584.g ID=Lus10039584.BGIv1.0 annot-version=v1.0 ATGGGGAAACTTCGATTGGAAGATGCGAAATCGTCGTCTGTGGAAGGCGGAATTGGCGAAACAGGGTATGGTAGCATTGGCCGTAGTCTCTTGCATGCCG GAATATCTGGGAATACCAAAGGTTGTTGGTGTCTCCCATTGAATATGAATTTCGGGTGTCTGTTTGAATTTAAAGCGTTTCCAGCAACTGGAACGGGAAG AGCATCCTCAGAGGATGAAGAGATCAGTTCTGACAAGAACAGTCGCTCCGGTGAGAAGGTGGAAAAGTTGAGAGGAAAAGAAGTCAATAGTTTGCTGAAG AGTTTCATTCTCTTCATTTCACTACTCATACTTTTAAACACAACTCAACAAAAAAGCATATACAAATCAATTGTGTCCCACCACATCTCCACCCAGTAA
AA sequence Show only first row Show all	>Lus10039584 pacid=23165314 polypeptide=Lus10039584 locus=Lus10039584.g ID=Lus10039584.BGIv1.0 annot-version=v1.0 MGKLRLEDAKSSSVEGGIGETGYGSIGRSLLHAGISGNTKGCWCLPLNMNFGCLFEFKAFPATGTGRASSEDEEISSDKNSRSGEKVEKLRGKEVNSLLK SFILFISLLILLNTTQQKSIYKSIVSHHISTQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039584 [exp]	0	1
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	15.5	0.6688
AT1G73210			Protein of unknown function (D...		Lus10038327 [exp]	27.2	0.6526
AT4G32480			Protein of unknown function (D...		Lus10018603 [exp]	31.9	0.6437
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041012 [exp]	43.4	0.6246
AT3G22740		HMT3	homocysteine S-methyltransfera...		Lus10006602 [exp]	103.7	0.5839
AT3G52360			unknown protein		Lus10016198 [exp]	129.0	0.5781
AT1G17100			SOUL heme-binding family prote...		Lus10001247 [exp]	183.2	0.5174
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10003796 [exp]	191.9	0.5274
AT1G16916			unknown protein		Lus10024703 [exp]	205.0	0.5340
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	272.7	0.5245

Compare expression of checked genes

Lus10039584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.