Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13760 677 / 0 Plasma-membrane choline transporter family protein (.1) AT3G03700 205 / 2e-59 Plasma-membrane choline transporter family protein (.1) AT3G04440 204 / 2e-59 Plasma-membrane choline transporter family protein (.1) AT5G17830 143 / 4e-37 Plasma-membrane choline transporter family protein (.1) AT1G25500 99 / 6e-22 Plasma-membrane choline transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005331 [exp] 905 / 0 AT5G13760 714 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10041476 [exp] 116 / 2e-27 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10034295 [exp] 115 / 2e-27 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261900 [exp] 732 / 0 AT5G13760 640 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.009G056700 [exp] 722 / 0 AT5G13760 639 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.019G040500 [exp] 231 / 1e-69 AT3G04440 422 / 6e-145 Plasma-membrane choline transporter family protein (.1) Potri.013G066100 [exp] 226 / 2e-68 AT3G03700 436 / 7e-151 Plasma-membrane choline transporter family protein (.1) Potri.010G128100 [exp] 123 / 4e-30 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.008G118200 [exp] 121 / 2e-29 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.009G056301 [exp] 0 / 1 AT5G13760 145 / 9e-40 Plasma-membrane choline transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [flax] [poplar] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Lus10039585 pacid=23164983 polypeptide=Lus10039585 locus=Lus10039585.g ID=Lus10039585.BGIv1.0 annot-version=v1.0 ATGGGCGCCACAGAACCTGAGGCGGAGAGGGAGAGAGAAGAAGGAAATGAGGAGGAAGAGAGAAGGGAAGGAGGAAGAGGAGTGGGAGAAAGAGATTTGG AGAAAGGAGAAGCGATAAACATTATTAACAATGGCGGAGAAGGATTAGGTGGTGGAGGAGGTGAAGAACAACATGGGAGAGAGTTTCATATGTCAATGAT GCAGAGGTTGAATCCCACAAATCCTCTGGGGATCCACGTCATCAATCAACTTCCCACCAGAGCAGCAGCAGCAGCTACTCCTTCACCTGCCCAGCCTTCA TTTCAGCCTCGCTCCACTCCCACCCCACAACAATCAGTAATAACACTGAATTCAAGAAAGTACACCAACAAGATATCTCTGTTCCTGTTCTGCCTGCACA TGGTTTTGGCAATTGGGTTAGTAGGTTTTCTGATATTCAAGGGAGTTCAAGGACTAATTCTAGCATCAGATAGAGTTAAAAGGAAAGAGATGAGGATCTT GAAGTATTTCCTACCACAGGTGGAAGCAGCATCGCTTCTGAGCATCACTCTTGCCTTCTCATGGCAGAAGGCATTTAGGGTGTGGCCTGGGTTCATGATT CATTTCATAATGTGGTGTTCGTTCCTTATGTCCTTATCCGCTGGGATTCTCTTAATCTGCTTCCAGAAGGCTTCCACTGATGGAGTTGGGGTTTGCCTCA TGGCCTTTGCAATCGGTAATGGCTTGTATGCTTGCTGGGTTACTCAAAGAATAGATTTTTGCACAAAGGTGTTGGTGAAATCCCTAGAACCTGTTTCGAA ATTTCCGGACTTGAATCAACCCACTTATTGGATGCTTGGCGTTGGCTTCTTGTGGATGTCTATGTGGATCGTTGCTGTTATTGGAGCCTTGAACTTCTAC TTCCCACCTTTGGTCATTATTGTGTTGGTATTGAGCTTGGCTTGGACTGCTGAAGTCCAGAGGAATGTGGTTAATTTGACTGTCAGCAGGGTAATTTCTC TTTATTACTTGAGAGGGATGCAATCCAGCACCAAGTTCTGCTTCCAAAGAGCTTTGACTAAGAACCTTGGGAGTGCTTGTCTCGGATCGTTATTCGTTCC AGCAATCGAGGCGCTCAGAATCATTGCTCGAGGTCTGAACTTGCTAGAGGGAGAGGATGAGTTCATGTTTTCTTGTGCTCACTGTTGCCTCAATGTCATG CAGTTCATCTTCAGCTGTGGAAATGGTTGGGCATTTGTACAGATAGCTGCATATGGAAAAGGGTTTGTGAAGGCATCAAAGGACACTTGGTCACTGTTCC AGAGCCAGGAAATGGAAGAAATAGTTGATTCAGACATAACAAGCTCCATATGCTTCTTAACTGGAGTATGCAGTGGCTCAATCTGTGTGATCATGGTTGC TGCCTGGACTTTCAAAGTCCATCAGCCCTTTACTGCAACCCTCTCCCTTTTGGCATTCTTTATTGGCTATCTCATGACTAGGATTGCAATGGCATTGCCC CATGCATGTGTGAGTTGTTACTATGTATGCTACGCGGAGAATCCTGACAACAGATTATTTGATAAAAGCATCAAAGACCGTCAGAGCTTGATCAAATCTG GCAGGGATGTGGTCGTGCCGACGCCTCGAGTACCACGTAGATTCACAACATGA
AA sequence Show only first row Show all	>Lus10039585 pacid=23164983 polypeptide=Lus10039585 locus=Lus10039585.g ID=Lus10039585.BGIv1.0 annot-version=v1.0 MGATEPEAEREREEGNEEEERREGGRGVGERDLEKGEAINIINNGGEGLGGGGGEEQHGREFHMSMMQRLNPTNPLGIHVINQLPTRAAAAATPSPAQPS FQPRSTPTPQQSVITLNSRKYTNKISLFLFCLHMVLAIGLVGFLIFKGVQGLILASDRVKRKEMRILKYFLPQVEAASLLSITLAFSWQKAFRVWPGFMI HFIMWCSFLMSLSAGILLICFQKASTDGVGVCLMAFAIGNGLYACWVTQRIDFCTKVLVKSLEPVSKFPDLNQPTYWMLGVGFLWMSMWIVAVIGALNFY FPPLVIIVLVLSLAWTAEVQRNVVNLTVSRVISLYYLRGMQSSTKFCFQRALTKNLGSACLGSLFVPAIEALRIIARGLNLLEGEDEFMFSCAHCCLNVM QFIFSCGNGWAFVQIAAYGKGFVKASKDTWSLFQSQEMEEIVDSDITSSICFLTGVCSGSICVIMVAAWTFKVHQPFTATLSLLAFFIGYLMTRIAMALP HACVSCYYVCYAENPDNRLFDKSIKDRQSLIKSGRDVVVPTPRVPRRFTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	0	1
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	3.2	0.9394
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	3.9	0.9482
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10018884 [exp]	4.7	0.9327
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022060 [exp]	5.2	0.9223
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	6.0	0.9342
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	8.1	0.9416
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042259 [exp]	9.2	0.9399
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	10.4	0.9385
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10042278 [exp]	11.8	0.9095
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	12.3	0.9346

Compare expression of checked genes

Lus10039585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.