Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35630 674 / 0 PSAT phosphoserine aminotransferase (.1) AT2G17630 655 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005333 [exp] 854 / 0 AT4G35630 677 / 0.0 phosphoserine aminotransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099900 [exp] 708 / 0 AT4G35630 647 / 0.0 phosphoserine aminotransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10039587 pacid=23165113 polypeptide=Lus10039587 locus=Lus10039587.g ID=Lus10039587.BGIv1.0 annot-version=v1.0 ATGGCTTCAAAGCTCACATCTCCCAACAACCTCCTCCTCCCAGGCCCCCACCGCCACCACCAGAGCAGAGCAACCAACAACCTCCGCCCATTCGCGGCCT TCTCCCTCAAAATCAAGCCCTTCTCCGTACGATGCGCCACCACCAACACCGCATCCTCGCCAATCTCCACCATCCATGCCGTAGATCCAGAGCGCGTCTT CAATTTCGCTGCCGGACCGGCTACCTTACCCGCCAACGTTCTCAAGAAGGCCGAATCGGAGCTCTACAACTGGCGCGGATCTGGGATGAGCGTCATGGAG ATGAGCCACAGGGGCAAAGAATTCATGTCCATCATCAACAAGGCCGAATCAGATCTCCGCGCTCTGTTGAACATTTCCAACGATTACTCCGTCCTCTTCC TCCAAGGTGGCGCCACCACTCAGTTCGCCGCCATCCCTCTCAACCTCTGCTCCCCGGAAGACTCTGTAGATTACGTCGTCACCGGATCCTGGGGGGACAA GGCGTTCAAGGAGGCGCAGAAGTACTGTAAACCTAGTCTGATCTGGTCAGGTAAGTCGGAAAAATACACTGCAATCCCTTCTTTTGATAGCCTTTCTCAG AGCGCCGACGCCAAGTATTTGCACATATGCGCGAACGAGACGATTCACGGGGTTGAGTTCAAAGATTACCCAACCCCTAAGAATGGGATCTTGATTGCGG ATATGTCTTCCAATTTCTGTTCGAAACCAGTGGATGTCTCCAAATTCGGGATCATCTACGCTGGGGCTCAGAAGAACGTTGGGCCGTCAGGGGTCACCAT TGTGATCATCAGGAAAGATCTGATTGGGAATGCTCAGGGGATTACTCCCGTGATGCTCGATTACAAGATCCACAGCGACAATAATTCGCTCTACAACACC CCTCCATGCTATGGGATTTACATGTGCGGGCTTGTTTTTGAGGATTTACTGGCACAGGGCGGGCTAGAGGAGGTTGAGAAGAAGAACAAGAAGAAAGGGG ATTTGCTGTACAATACTATTGAAGAGAGCAATGGGTTTTACAGGAACCCTGTGGAGAAGTCGGTGAGGTCGTTGATGAATGTGCCTTTCACGATGGAGAA GTCTGAACTGGAAGCAGAGTTCATCAAGGAGGCTGCAAAGGAGCAGATGGTGCAGCTCAAGGGGCACAGATCAGTGGGAGGGATGAGGGCTAGCATCTAC AATGCAATGCCTTATCAAGGTGTGGAGAAGTTGGTTGCCTTTATGAAGGACTTCCAGGCAAAGCATGCTTGA
AA sequence Show only first row Show all	>Lus10039587 pacid=23165113 polypeptide=Lus10039587 locus=Lus10039587.g ID=Lus10039587.BGIv1.0 annot-version=v1.0 MASKLTSPNNLLLPGPHRHHQSRATNNLRPFAAFSLKIKPFSVRCATTNTASSPISTIHAVDPERVFNFAAGPATLPANVLKKAESELYNWRGSGMSVME MSHRGKEFMSIINKAESDLRALLNISNDYSVLFLQGGATTQFAAIPLNLCSPEDSVDYVVTGSWGDKAFKEAQKYCKPSLIWSGKSEKYTAIPSFDSLSQ SADAKYLHICANETIHGVEFKDYPTPKNGILIADMSSNFCSKPVDVSKFGIIYAGAQKNVGPSGVTIVIIRKDLIGNAQGITPVMLDYKIHSDNNSLYNT PPCYGIYMCGLVFEDLLAQGGLEEVEKKNKKKGDLLYNTIEESNGFYRNPVEKSVRSLMNVPFTMEKSELEAEFIKEAAKEQMVQLKGHRSVGGMRASIY NAMPYQGVEKLVAFMKDFQAKHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	0	1
AT4G34200		EDA9	embryo sac development arrest ...		Lus10027868 [exp]	1.0	0.9366
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	2.0	0.9165
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	4.0	0.9265
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	4.2	0.9253
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	5.9	0.9079
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	6.5	0.9043
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	9.2	0.9036
AT3G12650			unknown protein		Lus10015695 [exp]	11.0	0.8864
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	11.5	0.8891
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	13.3	0.8838

Compare expression of checked genes

Lus10039587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.