Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 372 / 1e-124 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 362 / 9e-121 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 345 / 2e-114 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 283 / 3e-90 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 268 / 2e-84 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 265 / 3e-83 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G26310 257 / 3e-80 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 243 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 234 / 2e-71 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 221 / 2e-66 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029452 [exp] 417 / 2e-142 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 416 / 3e-142 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 409 / 2e-139 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 409 / 3e-139 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 322 / 4e-105 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 303 / 6e-98 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024037 [exp] 299 / 4e-96 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1) Lus10001905 [exp] 286 / 2e-91 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10041713 [exp] 284 / 3e-90 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096000 [exp] 425 / 8e-146 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 400 / 5e-136 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 390 / 8e-132 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 370 / 1e-123 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030400 [exp] 294 / 1e-94 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030500 [exp] 290 / 1e-92 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G041800 [exp] 284 / 1e-90 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030300 [exp] 273 / 2e-86 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 267 / 4e-84 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041900 [exp] 261 / 4e-82 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10039588 pacid=23165209 polypeptide=Lus10039588 locus=Lus10039588.g ID=Lus10039588.BGIv1.0 annot-version=v1.0 ATGGGGAGCAAGAACGTCCACGTGGTGATCTTTGCATCCCCAGGGATGGGCCACATCATCCCGCTGATCGAGTTCTCCAGGAAACTCGTCCTAAACCACC GCCATTGCTTCGCCACCATCATCATCCCGTCGTTGGGGCCGCCGCCGCCGGCTCAAATCGAGCTCCTCAAAACCCTCCCTCCACCTGTCACACACGTGCT CCTCCCTCCGGTGGACCCCGCCACATTGAGCCACGTCTCCACCGACGCCAAGCTCTTCCTCACCGTCGACCACTCGATGCCCCATCTCCGCGACGTGATC AGGTCGCTGTCGGATAAATTTCCTCTATCGGCACTGATCGCTGACATATTCGGCACCGACGCATTTGACGTGGCCAGGGAGTTCAAATTGGAGTCGTATT TTTTCGTGCCGTCGAACGTTTTGACTCTGGCGCTATGCAACTACATGCCGAAGCTGGATGCGGATGTTCAAGGGGACTACCGTCAACTGACCGAACCGAT TCGGCTGCCAGGGTGCCGGTTCGTGTTTCCGGTTGAGGATCTGCACCCTTCAATCCTGGACAGGAACAGCGATGCTTACCCGATGCTGCTTCGACACTCG AAACGGCAGCGTTTGGCTGACGGGTTTATAGTGAACAGCTTCATGGAGGTGGAAGGAGAGATCATCGAAGCTTTGAGAGGGGAGGAGTTCGCGAATGGAA GACCGATCTTTCCAATTGGACCCATACTTCAATCCACCGCTGCTAATTCTTCTTCTGGCCCAACCGATGAGTGTCTGGAATGGCTAGACAAACAGCCGAC ATCTTCCGTATTGTTCGTCTCATTCGGCAGCGGCGGGACGCTATCACCGGCGCAATTGGACGAGTTAGCATTCGGCTTAGAGACCAGCGGAAAGCGATTT CTGTGGGTCGTAAGAAGCCCAAACACTAGTACGGATACGAACGCATCCTACATCGGCCCACAGAGCAAGTCCAGCCCGCTAAGTTTCCTACCGGAAGCGT TCTTGGAGCGGACGAAAGGGCAAGGCTTAGCGGTGGCATCGTGGGCGCCGCAGATAGAGGTGCTTAGCCACAGGGCCACCGGCGGGTTCTTGAACCACTG CGGATGGAACTCGACGATGGAGAGCATTGTAAACGGGGTTCCGTTGATTGCGTGGCCTTTGCACGGGGATCAGAAGATGGTGGCGGTTCAATTGGTTGAG TTTCTCAAGATTGCGTTGAGGCCTGAGGTGAAAGAAAGTGGAAAGAGGATAATTGGGAGGGAAGAGATTGCTAAAGTGGTTAGTGATTTGATGGAAGGGG AAGAAGGTGCGGCGGTGAGGAGAAGGATGAGTGAGCTTAGGAAAGCGGCGTTGAATGCACAAGTGAGTGTAGATGGGTCCTTGGAACAGCTTGTGCTTCG TTGGAGGAAGAATCCAGTTGAATAA
AA sequence Show only first row Show all	>Lus10039588 pacid=23165209 polypeptide=Lus10039588 locus=Lus10039588.g ID=Lus10039588.BGIv1.0 annot-version=v1.0 MGSKNVHVVIFASPGMGHIIPLIEFSRKLVLNHRHCFATIIIPSLGPPPPAQIELLKTLPPPVTHVLLPPVDPATLSHVSTDAKLFLTVDHSMPHLRDVI RSLSDKFPLSALIADIFGTDAFDVAREFKLESYFFVPSNVLTLALCNYMPKLDADVQGDYRQLTEPIRLPGCRFVFPVEDLHPSILDRNSDAYPMLLRHS KRQRLADGFIVNSFMEVEGEIIEALRGEEFANGRPIFPIGPILQSTAANSSSGPTDECLEWLDKQPTSSVLFVSFGSGGTLSPAQLDELAFGLETSGKRF LWVVRSPNTSTDTNASYIGPQSKSSPLSFLPEAFLERTKGQGLAVASWAPQIEVLSHRATGGFLNHCGWNSTMESIVNGVPLIAWPLHGDQKMVAVQLVE FLKIALRPEVKESGKRIIGREEIAKVVSDLMEGEEGAAVRRRMSELRKAALNAQVSVDGSLEQLVLRWRKNPVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10039588 [exp]	0	1
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10007280 [exp]	15.7	0.9120
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	22.4	0.9047
AT4G34760			SAUR-like auxin-responsive pro...		Lus10028466 [exp]	28.5	0.9021
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10040995 [exp]	32.4	0.9007
					Lus10008326 [exp]	37.2	0.9004
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	39.8	0.8997
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	43.5	0.8997
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	46.6	0.8994
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	49.6	0.8985
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011817 [exp]	52.6	0.8984

Compare expression of checked genes

Lus10039588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.