Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15920 1158 / 0 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) AT3G47460 71 / 5e-12 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 64 / 4e-10 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT5G61460 62 / 2e-09 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07660 62 / 2e-09 SMC6A structural maintenance of chromosomes 6A (.1) AT3G54670 52 / 2e-06 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029476 [exp] 2004 / 0 AT5G15920 1172 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10029473 [exp] 193 / 3e-57 AT5G15920 76 / 6e-17 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10005338 [exp] 156 / 5e-44 AT5G15920 124 / 8e-34 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10027219 [exp] 67 / 6e-11 AT5G61460 1070 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027215 [exp] 63 / 1e-09 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10024895 [exp] 54 / 9e-07 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 53 / 2e-06 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013583 [exp] 44 / 0.0008 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262600 [exp] 1335 / 0 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Potri.001G125000 [exp] 67 / 8e-11 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G107700 [exp] 65 / 3e-10 AT5G61460 1237 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G108400 [exp] 65 / 4e-10 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.005G224900 [exp] 53 / 1e-06 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.009G155200 [exp] 44 / 0.0008 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039590 pacid=23165005 polypeptide=Lus10039590 locus=Lus10039590.g ID=Lus10039590.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCTTCTCGGCGTACAATGAAGATGGAGCGGCCTCCGGCAGTAGACGAGCCGTTTTCTAAGCGAAGCAAAGCTTCTACAACTGTCCGAGGGG AGGATGATTATATGCCTGGGAGTATCATTGAGATGGAGCTTTCGAACTTCATGACATATGATTCTTTGTTTTGCAAGCCAGCACCACGCTTGAACCTCGT AATTGGCCCCAACGGGTCGGGGAAAAGCTCTATTGTGTGCGCCATTGCACTTGGTCTTTGTGGTGAGCCGCAGCTATTAGGCAGAGCAACAAGTACTGGG GCATATGTTAAGCGTGGAGAGGATTCTGGATACATTAAGATAACTTTAAAGGGAAGCTCGAATTATGAGAAGATTACCATCACACGCAAGATTGACACAC GTAACAAGTCAGAATGGCTATTCAATGGAAAGTTAGCATCAAAGAAAGAGGTGTCCCAAGTAATTCAAAGGTTCAACATCCAAGTTAACAATTTGACGCA ATTCTTGCCACAAGACAGGGTGTGCGAATTTGCAAAGTTAAGTCCTGTGCAGCTTCTTGAAGAGACTGAAAAGGCTGTTGGTGATCCCCAACTTCCAATC CAACACTGTGCTCTTGTTGAGAAAAGTCGTGAATTAAAGAATATTGAGCTGGCTGTCAAGAGAAATGGAGAAACTCTTCACCAGTTAAGGGCTCTTAATG CTGAACTTGAAAAGGATGTAGAGCGTGTGCGGCAAAGAGATGAACTTCTAGCAAAGGTGGAATTGATGAAGAAGAAATTGCCATGGCTGGAGTACGATAG GCAAAAGGCGGAATACGAGAAAGCGAAAATTCTTGAAATGGATGCAGATAAGAAGTTGAAAAAAGCTGCGACAAAATTAAAGCATTTCAGTGAGCCGATT GAGTTGAAAAAAACAGAAAGAGTTCGTTTGGAGGATGATTGTAAAAAGGCTGGCAGTATTGTGAAGGCCAATGCAACTCGTCGCATACAACACCAGGACC AGGCGAACCAATTGGAGGTGCAATTTCGAGGAAAATGTATAGAAATAGAGGACTTGCGGAGAGAGGAGGCCTCCCATAAACAAAATGTACTAAAAGTTGA GAAGGATCTTTCTGCTGCTGAAATTGAACTTCAAAACTGCCCTGTTTCTGAACCTCCAAAGGAAGCACTTGAGATGGGGGAAAGGAAAAATAAGATATTA TATACATTAAAGAACTCTGGAACGGAGAAGATAATGGAGGCTTACAGCTTGGTACAACAGCATCAAAATGAGCTGAAAAAGCATGTCTATGGTCCAGTTC TGCTTGAGGTTAATGTCTCGGATAAGATCCATGCTGGCTACTTAGAAAGCCGAGTGCCATATTACATGTGGAAGTCTTTCATCACTCAAGATGCTAGTGA TCGTGATTTTCTGGTCAGAAAGCTTAAGGGATATGATATTCCCATTTTGAACTTTGTAAGCGATGGAAACAGTTGCGGAGGATCCTTTGTAATATCTGAG AAGATGCATGAGTTTGGCATATACTCACGACTTGACCAAGTTTTTTATGCTCCTGATGTTATAAAGAAAGTTTTAATCAGCCAGTGTAACCTGGACTCAT CTTATATTGGGTCCAAGGAATCTGTTCAGAGGGTTAATGAGGTCCCAAAGCTGGGTATAATTGACCTTTGGACTCCAGAAAATCACTACTATTGGAAGAA ATCTAGATACAGCGATCATGTGACAGCAATTCTTGATCCAATTAACCGTTCACGTCTTATCGGTGGAAATTTAAGCACCGGGGAGACTGAGAAACTGCAT CAAAGTATAGCTGAGCTAGAACAAGAAGTTTCTGCTATACAAGAAAGTGTGGACTACTCAAAAAAGGAGCTAGTGCTGTTAGAAAATGAAGAATCTAAAC TACATAGACAGAGGGAAGAAATTACCAATGAGGCACGACATGAAACCCAAAAACGACTCGAGTTGCAAAACCGCGTAGATCGAATGGAAAGAAAGTTACA ATCTCTGAAGAATGGAAGTGACTTTGATCGACGGATGGCAAAGCTTATAGATGATGCAAGAAAGGTTAACATTCAGCGGGTGCAATGTGCAAAGGAAATG AAGACCTTGCTTCTTGAGGCAGTTTCATGTAAACAGAGCTATGCGGCAAAAGAAATGACATCTATCGAGTTTGATGCAAAGGTCAGTGAAATGGAGATGA CCTTGAAGGAGCACAAAAAGGTCGCAGAGCAAGCAGCAATTCATCTTCAACACTGCAAGGATGAAGTAGAAAATCAGCGAAAAGAACTCATAGTCGTGAA GAAGCATGCAGAATCGGTTGCTGTCCTAACTCCAGAGCTTGGACGGTCATTTTGTGAGATGCCCACAACAGTTGAGGAATTGACAGCTGCTATTCAGGAT AATACGTCCCAAGCTAATTCCATCCTTTTTCTGAACCAAAATGTGCTGGAAGAATATCAACATCGTCAGCAGAAGATAGAAACGATGGACAAGAAATTGG AAGCAGATATTGATGAACAGAAGAGGTGTCTTGAAGAAATAGATGGACTGAAAGCAAGTTGGCTTCCCAAGTTGAGAAATCTTGTTGCTCAGATAAATGG AACTTTCAGTCGGAACTTCCAGGAGATGGCTGTTGCAGGAGAAGTTTCTTTAGACGAGCACGACAAAGACTTCGATCAATATGGAATTTTAATAAAAGTG AAGTTCAGGCAAGCAGGAGAACTGAAAGTCCTCAGTGCTCATCATCAATCTGGAGGGGAACGATCAGTTTCAACAATTCTGTATCTTGTTTCACTTCAAG ACCTCACTAACTGCCCATTCCGGGTGGTTGACGAAATCAATCAAGGAATGGATCCGATAAATGAAAGGAAGATGTTTCAACAGCTGGTGAGGGCTGCCAG CCAACCAAATACACCGCAGTGTTTCTTGCTGACCCCAAAGTTATTGCCGGACCTAGAGTACAGTGAGGCATGCAGTATTTTGAACATAATGAATGGTCCT TGGATTGACCAGCCTTCTAAAGTTTGGAGCAGCGGTGACTGTTGGAGTGTTGTGAGAGGGCTTGTTCCTTCCCCCCATAGCTAG
AA sequence Show only first row Show all	>Lus10039590 pacid=23165005 polypeptide=Lus10039590 locus=Lus10039590.g ID=Lus10039590.BGIv1.0 annot-version=v1.0 MAESSRRTMKMERPPAVDEPFSKRSKASTTVRGEDDYMPGSIIEMELSNFMTYDSLFCKPAPRLNLVIGPNGSGKSSIVCAIALGLCGEPQLLGRATSTG AYVKRGEDSGYIKITLKGSSNYEKITITRKIDTRNKSEWLFNGKLASKKEVSQVIQRFNIQVNNLTQFLPQDRVCEFAKLSPVQLLEETEKAVGDPQLPI QHCALVEKSRELKNIELAVKRNGETLHQLRALNAELEKDVERVRQRDELLAKVELMKKKLPWLEYDRQKAEYEKAKILEMDADKKLKKAATKLKHFSEPI ELKKTERVRLEDDCKKAGSIVKANATRRIQHQDQANQLEVQFRGKCIEIEDLRREEASHKQNVLKVEKDLSAAEIELQNCPVSEPPKEALEMGERKNKIL YTLKNSGTEKIMEAYSLVQQHQNELKKHVYGPVLLEVNVSDKIHAGYLESRVPYYMWKSFITQDASDRDFLVRKLKGYDIPILNFVSDGNSCGGSFVISE KMHEFGIYSRLDQVFYAPDVIKKVLISQCNLDSSYIGSKESVQRVNEVPKLGIIDLWTPENHYYWKKSRYSDHVTAILDPINRSRLIGGNLSTGETEKLH QSIAELEQEVSAIQESVDYSKKELVLLENEESKLHRQREEITNEARHETQKRLELQNRVDRMERKLQSLKNGSDFDRRMAKLIDDARKVNIQRVQCAKEM KTLLLEAVSCKQSYAAKEMTSIEFDAKVSEMEMTLKEHKKVAEQAAIHLQHCKDEVENQRKELIVVKKHAESVAVLTPELGRSFCEMPTTVEELTAAIQD NTSQANSILFLNQNVLEEYQHRQQKIETMDKKLEADIDEQKRCLEEIDGLKASWLPKLRNLVAQINGTFSRNFQEMAVAGEVSLDEHDKDFDQYGILIKV KFRQAGELKVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILNIMNGP WIDQPSKVWSSGDCWSVVRGLVPSPHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10039590 [exp]	0	1
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	6.2	0.9274
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	8.8	0.9307
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10024131 [exp]	12.6	0.8512
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	16.0	0.8854
AT4G02800			unknown protein		Lus10000658 [exp]	17.2	0.9260
AT4G17000			unknown protein		Lus10035651 [exp]	18.9	0.9210
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	23.7	0.9192
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	27.3	0.8864
AT3G15550			unknown protein		Lus10025757 [exp]	28.1	0.9165
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	29.3	0.9155

Compare expression of checked genes

Lus10039590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.