Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12410 87 / 8e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G48350 78 / 6e-18 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT4G13870 79 / 2e-17 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT2G36110 73 / 1e-15 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12470 65 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G56310 65 / 2e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12460 63 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12430 57 / 8e-10 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G12440 56 / 2e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G62320 52 / 2e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029478 [exp] 338 / 4e-120 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029479 [exp] 188 / 6e-61 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039164 [exp] 141 / 4e-42 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10013769 [exp] 137 / 3e-40 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10043049 [exp] 79 / 7e-18 AT2G36110 121 / 4e-34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022556 [exp] 62 / 1e-11 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2) Lus10010930 [exp] 59 / 2e-10 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010357 [exp] 55 / 4e-09 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036491 [exp] 54 / 9e-09 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G031400 [exp] 122 / 7e-35 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028700 [exp] 120 / 6e-34 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.011G116000 [exp] 113 / 2e-31 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.017G059200 [exp] 79 / 2e-17 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.019G021900 [exp] 64 / 2e-12 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028400 [exp] 56 / 1e-09 ND / Potri.005G020000 [exp] 57 / 2e-09 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.013G049000 [exp] 50 / 1e-07 AT5G06450 / Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028600 [exp] 50 / 1e-07 ND / Potri.001G320201 [exp] 0 / 1 AT4G13870 0 / 1 Werner syndrome-like exonuclease (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10039591 pacid=23165119 polypeptide=Lus10039591 locus=Lus10039591.g ID=Lus10039591.BGIv1.0 annot-version=v1.0 ATGGAGGTTAACTACGTGAGATCGGTCTACTTCGGCGGCTACGAAATCGAAACCACGGTTACCGACCAGGCCTACGCTGTCGAAAACTGGGTTCGATCCT TCCCGCCTGGTTGGAAGCGGATAGTGGGACTGGACTGCGAGTGGATGCCCTTCTTTTATAACAACCAGGACAACATAACGGCTGTGCTCCAACTCTGCGT CGAAACCAAGTGCATCATCATACAGATGTCCTACCTCGAATACATCCCCCAGGCCCTGGCCGATTTCCTCGAGAATCCCAATAACTATTTCGCAGGGGTC GGGGTGGGCGCTGACGTGAGTAGGTTAACAGCAGATTACGGGCTCAGCTGCTCCTCAACTGCTGACATTCAGACCATCGCTAGGGAAGAGTGGAACTGGA GTAATCTTCCTGGGCTGAAGAATATTTTGCGCCATGTGGAAGGGCTTGTCATGGAGAAACCGCAGCATATTAGGCTGAGCAATTGGCAGAACAGAGATCT AGACCCCGAGCAGGTTGAGTATGCTTGCATTGATGCTTTTGCTTGTTATAAGATCGGCTACAATCTGCGACGCCGCATCGATGCTTTTATTTACTAG
AA sequence Show only first row Show all	>Lus10039591 pacid=23165119 polypeptide=Lus10039591 locus=Lus10039591.g ID=Lus10039591.BGIv1.0 annot-version=v1.0 MEVNYVRSVYFGGYEIETTVTDQAYAVENWVRSFPPGWKRIVGLDCEWMPFFYNNQDNITAVLQLCVETKCIIIQMSYLEYIPQALADFLENPNNYFAGV GVGADVSRLTADYGLSCSSTADIQTIAREEWNWSNLPGLKNILRHVEGLVMEKPQHIRLSNWQNRDLDPEQVEYACIDAFACYKIGYNLRRRIDAFIY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12410			Polynucleotidyl transferase, r...		Lus10039591 [exp]	0	1
AT1G68430			unknown protein		Lus10034103 [exp]	9.8	0.8017
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10012996 [exp]	17.4	0.7928
AT4G21500			unknown protein		Lus10018431 [exp]	26.8	0.7485
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	28.5	0.7741
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	34.6	0.7716
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	44.7	0.7352
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	45.4	0.7686
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	56.9	0.7600
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10026777 [exp]	59.6	0.7650
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	63.2	0.7592

Compare expression of checked genes

Lus10039591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.