Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62390 857 / 0 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT2G25290 409 / 8e-132 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 401 / 6e-128 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 212 / 6e-58 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G56090 47 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G14950 47 / 5e-05 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT2G41520 47 / 6e-05 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT5G12430 45 / 0.0002 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT4G12400 45 / 0.0002 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G56440 44 / 0.0003 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029481 [exp] 1391 / 0 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10001927 [exp] 420 / 5e-136 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10006196 [exp] 417 / 5e-135 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001947 [exp] 414 / 1e-133 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001948 [exp] 414 / 2e-133 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10008035 [exp] 324 / 6e-100 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10038106 [exp] 320 / 1e-98 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10035117 [exp] 67 / 6e-12 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 68 / 2e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002900 [exp] 1033 / 0 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 1021 / 0 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.018G023500 [exp] 453 / 7e-149 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.006G258300 [exp] 451 / 4e-148 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 421 / 2e-136 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G100700 [exp] 72 / 1e-13 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 69 / 1e-12 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G097300 [exp] 46 / 7e-05 AT1G56090 260 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G050200 [exp] 45 / 0.0003 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 44 / 0.0007 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10039592 pacid=23165206 polypeptide=Lus10039592 locus=Lus10039592.g ID=Lus10039592.BGIv1.0 annot-version=v1.0 ATGGGGAAATCCGGGGGGAAGAAGAAGAAGGGAACCGCCAATGGCAGTGGCAATTCGACTTCGAATCATGTCCCAGCAGGTGATCAAAATCGTAATCACC TTAATACCAAATCAACTGCTAACAATGCTGCTGCGGCTAATGGTAATGGTGGGATTGATGTGGACTCATCAATTTTTCTAAAGAGAGCCCACGAGCTGAA AGAAGAGGGTAACAAGAGGTTCCAGAACAAAGATTATGTGGGTGCTCTTGAACAGTATGAGAGTGGTCTTCGTTTGACCCCCAATTCCCACCCTGATCGT GCTGTCTTTCACAGCAATAGGGCTGCTTGTATGATGCAAATGAAGCCGATTGACTACGACTCTGTCATTTCCGAGTGCTCCATGGCCCTCCAGGTCCAGC CTCGGTTTGTCAGGGCTCTACTCAGGAGGGCTCGTGCTTTCGAGGCTATTGGCAAGTTCGAAATGGCCTTGCAGGATGTTCAGGTCCTGTTGGATGCAGA CTCCAATCACCGGGATGCTTTGGATATTGCTCGTAGATTGAGGACTGCGTTGGGACCTCGACAGGAGGCTCAGCAGGACCTTCAAAGCCGGCCTTCCCCT GCTGCTTTAGGGGCTTCTGCAGTCCGTGGTGCCCCAATTGCTGGCCTCGGACCATGTTTGCCTGCTCGGCCTATACCAAAGAAGGGTGCAGCAACTCCTG TCGGTTCAACTGTATCTCCTACCAACAAACAAGAAAAGAATCTGACGGCTGTCGTGGAGAATGGTCAAGAGACGAAAACACAGCAGCCGAAAGTCATGTT ACGGCCTTCCACTGGTTCTGCTAAAGTGACTTCTGATTCATGTAAGGATCTTGGTGGAGGGAAGCAATTACATGCTTCGTTAAGGCCGGTACCCTCTACT GGAAGAGAATCAGAAGTTGCAGGTAGGTTGAGGCCTGTTAAACTTGTTTATGATCACGACATAAGGCTGGTTCAGATGCCTGTCAATTGCTCTTTCAAAG TGTTGAGGGAGATTGTAAGCAAGCGTTTCCCTTTCTCAAAATCTGTTCTGATCAAGTACAAAGACAATGATGGGGATTTAGTTACAATCACATCAACATC TGAGCTCAAGTCAGCAGAATCTGCTGCAGATGGTCCTTTAGCTAAGACTGGTGATCCTGAGATGGTGGATTTGGTTGGAATGTTGAGGCTGCATATTGTC GAAGTTTCGGAGGAGCAAGAGCCATGTATACCAGAAGAACTAGAGGAGGTGGAGGAGGAGAAGCCGGTTGGGAGTGAATCTCACTCGTCACTTGGCGAAG CTATCTTGGAAGCCCCTGAAAGTGAAATGGATAAAGTAGAAGAGGAAGCTCCAAAGGAAGAGAAAACAGGAGGTTTGGACGATCCGGAGAGTAAGGAAAT TGAAATGGACGACTGGCTATTCGACTTTGCTCAGCTTTTCCGGACCCATGTTGGTATAGACCCTGACGCACATATTGATTTGCATGAGCTTGGGATGGAG TTATGTACTGAGGCTCTTGAGGAGACAGTGACAAGTGAGGAAGCTCAAGTCCTCTTTGATAAGGCTGCTCAGAAGTTCCAGGAGGTGGCTGCATTGGCTT TCTTCAACTGGGGCAATGTCCACATGTGTGCTGCAAGGAAACGGATTCCTTTAGACGAGTCTGCCGGGCAAGATGTGGTGGCCACCCAGCTTCAGACTGC TTATGAATGGGTGAAGGAGAAATATTCTTCAGCGAGGACGAAGTACGAGGAAGCGTTGGTGATCAAGCCAGATTTCTACGAAGGGCTGCTCGCATTAGGA CAGCAACAGTTTGAAATGGCCAAGCTCCACTGGTCGTTTGCCCTCGCCCAGAAAATCGATCTTGCTAACTGGGATTCAACAGAGACGTTGGAGCTCTTTA ATAGCGCGGAGCAGAAGATGAAAGCTGCAACGGAAATGTGGGAGAAGATGGAGGAACAGAGAGCAAAGGAGCTGAAAGATCCAAGTTTGAGCAAGAAAGA TGAATGGTTGAGAAAAAGGAAGAAACATGGAAGCACCAACATCACTGAAAGCGAGAGTGGTCATGTTGAGCTGACGCCAGAAGAAGCAGCTGAGCAAGCA TCAGTAATGAGATCGCAGATACACCTCTTCTGGGGGAACATGCTATTTGAACGTTCCCAAGTGGAATGCAAGCTAGGAACTGGTGATTGGAGCAAGAACC TAGATGCTGCAGTTGAGCGGTTCAGGCAGGCTGGAGCTCCAGAAGCAGACATTTCAATGGTGTTGAGGAGCCACTTCTCAAATGGAGGTCCAATAAAAGG GGAAGAAAATGGTGTCAGCAGCAAAGTGGAGACTGCAAATGGAGAGGTGAAAGAATGA
AA sequence Show only first row Show all	>Lus10039592 pacid=23165206 polypeptide=Lus10039592 locus=Lus10039592.g ID=Lus10039592.BGIv1.0 annot-version=v1.0 MGKSGGKKKKGTANGSGNSTSNHVPAGDQNRNHLNTKSTANNAAAANGNGGIDVDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESGLRLTPNSHPDR AVFHSNRAACMMQMKPIDYDSVISECSMALQVQPRFVRALLRRARAFEAIGKFEMALQDVQVLLDADSNHRDALDIARRLRTALGPRQEAQQDLQSRPSP AALGASAVRGAPIAGLGPCLPARPIPKKGAATPVGSTVSPTNKQEKNLTAVVENGQETKTQQPKVMLRPSTGSAKVTSDSCKDLGGGKQLHASLRPVPST GRESEVAGRLRPVKLVYDHDIRLVQMPVNCSFKVLREIVSKRFPFSKSVLIKYKDNDGDLVTITSTSELKSAESAADGPLAKTGDPEMVDLVGMLRLHIV EVSEEQEPCIPEELEEVEEEKPVGSESHSSLGEAILEAPESEMDKVEEEAPKEEKTGGLDDPESKEIEMDDWLFDFAQLFRTHVGIDPDAHIDLHELGME LCTEALEETVTSEEAQVLFDKAAQKFQEVAALAFFNWGNVHMCAARKRIPLDESAGQDVVATQLQTAYEWVKEKYSSARTKYEEALVIKPDFYEGLLALG QQQFEMAKLHWSFALAQKIDLANWDSTETLELFNSAEQKMKAATEMWEKMEEQRAKELKDPSLSKKDEWLRKRKKHGSTNITESESGHVELTPEEAAEQA SVMRSQIHLFWGNMLFERSQVECKLGTGDWSKNLDAAVERFRQAGAPEADISMVLRSHFSNGGPIKGEENGVSSKVETANGEVKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	0	1
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	1.4	0.8889
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	1.4	0.9249
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	2.2	0.8537
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	4.5	0.8611
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	4.6	0.8454
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	5.7	0.8401
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	6.7	0.8423
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	9.2	0.8472
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10043286 [exp]	10.6	0.8441
AT2G16800			high-affinity nickel-transport...		Lus10019792 [exp]	11.0	0.8420

Compare expression of checked genes

Lus10039592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.