Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 75 / 1e-15 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 66 / 1e-12 F-box and associated interaction domains-containing protein (.1) AT3G10430 65 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT3G25460 60 / 1e-10 F-box and associated interaction domains-containing protein (.1) AT3G08750 60 / 1e-10 F-box and associated interaction domains-containing protein (.1) AT4G04690 60 / 1e-10 F-box and associated interaction domains-containing protein (.1) AT3G17620 60 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT1G46984 59 / 2e-10 F-box family protein (.1) AT3G16210 59 / 2e-10 F-box family protein (.1) AT4G22390 59 / 3e-10 F-box associated ubiquitination effector family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029527 [exp] 259 / 8e-86 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) Lus10031020 [exp] 231 / 2e-75 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10026587 [exp] 96 / 4e-23 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10013873 [exp] 92 / 6e-22 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10037892 [exp] 88 / 2e-20 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038603 [exp] 88 / 2e-20 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10038606 [exp] 87 / 4e-20 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 84 / 5e-19 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10008870 [exp] 82 / 4e-18 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262900 [exp] 118 / 1e-31 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 96 / 4e-23 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.011G121200 [exp] 94 / 9e-23 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 92 / 5e-22 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 89 / 8e-21 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.015G013800 [exp] 86 / 1e-19 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 84 / 3e-19 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 84 / 4e-19 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058900 [exp] 81 / 7e-18 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.017G012200 [exp] 80 / 2e-17 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10039593 pacid=23165252 polypeptide=Lus10039593 locus=Lus10039593.g ID=Lus10039593.BGIv1.0 annot-version=v1.0 ATGATGAAGCATCTTCCAGAAGATGTGGTGGTACACATCCTAGCCAGGTTGCCTGTCAAAGAAATCCTCAAATGCAGGTCCGTCTGCAAAACCTGGTACT CTCTCATTTCCACTAAAACCTTCCAATCTTATCACCTCAATCATAATGGGAACCCTAGCCTCATACTTTTCCGCCATGGTATCGGAAAGGATGAAAGAAC CGAGCATTACTGCTTGTGGGAGGAGTTGGATGCTGATTTCCCTCCTACTCGTCTCCATGAGTTCGATTCTCCCTTCAAATCTGCTGATGCTAAATTTCCG CTAAAGATTGCTGGTTGTTGCAATGGCCTGGTTTATCTCACTGACGATAACTCCGATTCGAATACCAGAGCAGCTCTTTGGAACCCACAAATCAGGAAAC TTGTTGAAATTCCTCCTCCAATCGTAACTCTCGACTCAGAGATGATGTGGTGTCTCTGCGCAGTGGGGTTTGGGTTTGATGCTCTGAATGATGACTACAA GTTGGTGAGAGTCACTTCAAGTGCATACATGGGTCATCAGTCAATTGAGGTTTATTCTTGGAGAAGTGTGTTCTGGAGAATAGTTGAACACCCTTTAAAT TGTGTTTAG
AA sequence Show only first row Show all	>Lus10039593 pacid=23165252 polypeptide=Lus10039593 locus=Lus10039593.g ID=Lus10039593.BGIv1.0 annot-version=v1.0 MMKHLPEDVVVHILARLPVKEILKCRSVCKTWYSLISTKTFQSYHLNHNGNPSLILFRHGIGKDERTEHYCLWEELDADFPPTRLHEFDSPFKSADAKFP LKIAGCCNGLVYLTDDNSDSNTRAALWNPQIRKLVEIPPPIVTLDSEMMWCLCAVGFGFDALNDDYKLVRVTSSAYMGHQSIEVYSWRSVFWRIVEHPLN CV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039593 [exp]	0	1
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10041501 [exp]	3.6	0.7672
AT1G23000			Heavy metal transport/detoxifi...		Lus10028529 [exp]	14.2	0.7310
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10012603 [exp]	33.6	0.7138
AT5G19370			rhodanese-like domain-containi...		Lus10000413 [exp]	48.4	0.6888
					Lus10029097 [exp]	48.9	0.6913
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10003138 [exp]	199.5	0.6294

Compare expression of checked genes

Lus10039593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.