Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18520 608 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 287 / 4e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 275 / 9e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 268 / 2e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 270 / 6e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 266 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 260 / 1e-76 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G50420 256 / 3e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 255 / 4e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 255 / 2e-74 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029482 [exp] 1219 / 0 AT4G18520 624 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 291 / 7e-87 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 286 / 5e-85 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 279 / 6e-84 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 274 / 1e-81 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 263 / 2e-77 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 262 / 8e-77 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 264 / 1e-76 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 264 / 1e-76 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170300 [exp] 729 / 0 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 297 / 3e-89 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 291 / 1e-87 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 291 / 2e-86 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 287 / 4e-86 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 277 / 6e-83 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G164900 [exp] 277 / 8e-83 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 280 / 2e-82 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 273 / 2e-82 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 278 / 2e-81 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039594 pacid=23165357 polypeptide=Lus10039594 locus=Lus10039594.g ID=Lus10039594.BGIv1.0 annot-version=v1.0 ATGATTCCGTTAGCCGCCGTCTTATCATTTTCGCTTCTCTCCCAAACGCCAGCGCGTGTTGCCCTTCACCCACTTCACTCCCACTACTTCCCCACCAAAC TCACTTCCAAAACGGGAAGAAATCGCGCTGCAACTTCAGTGAATCTCCCTTGCTTCTCTAACAAAGACGACTTCAGCTCCCATTATCTCGACGACACACC TGACTTTCAAAGCTGTGAAGAAGCTGATGGCCCAGGTTGTCGCTCCTCGCAACCGTGGAGTCGGTCCGTCGACTCTGTTCTGCTCGGGCAATGGCTTCAG TCATGCGATAAAGTCAAAGACGTCAAGATGGTTCATGCCGTTTCCTACAGGTGTTCAAGGAGTTTTGCAGTATATGTAAATAATAATTTAATCAGCGCTT ATTCAAGACTGGGTGAGCTGGACCACGCACGCAAGACGTTTGATAAAATGCCACACCGAAATGTTGTCAGTTGGACGGCAATGATTGATGCGTACTCCAA TGCTGGATTGGATGACGAAGCTTTGAGTTTGCTAATCAAGTGCATAGAGAGTGGAATCGGAGCCAACGGCAAAACCTTTGTGTGTGGTCTGAATTTATGT AGTCGCAGGTTGGATTTTGATCTTGGCAGGCAAGTTCATGCTAGCATTATGAAGGAGAATTGGAGGAATGTAATCGTTGATAGTGCCATTGTTCATTTCT ATGCAAAATCTGGGGACTTGGCTGCTGCTTTTTGCGCATTCAATAGCATGGTAGAGCGGGATGTGGTAAGTTGGACGACTATGATTGCAGCTTGCTCGCA GCAAGGGCTTGGAATAGAGGCTTTTGGACTGTTGTCACAAATGTTAAGCAGTGGATTGTCGCCTAATGAGTTCACTGTATGTAGTGTTCTAAAGGCTTGC GGGGAGGAAAATGCACTCAAGTTGGGAAGGCAGCTACACGGATCCATACTCAAGAAAATGTGGGAGCATGATGTTTTTACAGGATCTTCCTTGGTCGATA TGTATGCAAAATGTGGCAAGATTCTCGATGCTCGTAAAGTGTTTAATATCATGAGAAGAAAGAACACAGTTACTTGGACTTCCCTTATCGCAGGCTATGC CAGGGCAGGGCTCGGCGAGGAGGCCGTAAGTCTGTTTCGACTGATGCAGAAGCGGAAAGTAAGTAGAAGCAACTTAACTACTGTGAGTATTCTCAAAGCT TGTGGTTCAATTTTAGCCCTGAAGACTGGGAAAGAAGTTCATGCACAAATCATCAAAGACTCGGTGCAATCAAATGAGTACGTAGGAAGTAGCCTTGTGT GGTTCTATTGCAAATGTAGTGAATGGCAAACTGCGGCAAAGGTGTTCCAACAAATGTCTCTCCAGAGCGTTGTTTCGTGGACTGCCATGATTTCGGGATT TGCAGATCTTGGTCACGAGTCCGAGGCATTGGGGTTTCTGATAGAGATGATGGAGGAAGGAGTGCAACCAAATTCATTCACGTACTCGTCTGCCTTGAAG GCATGTGCCGGTCTTAACTCTGTTCAGCAAGGGAAATCGATACACTCCTTTGCAAGCAAGACCAAAAGCATGGGTAATGTGTATGTAGGTTCAGCATTAG TTCATATGTATGCCAAAGGCGGGTATCTACCGGAGGCGATTCAGGTGTTTGATGAGATGCCTGAGCGGAATCGGGTTTCTTGGAAATCGATGATCACAGG TTACACCAAGAATGGGCTGTTTGAACAGGCGCTGAGGCTCATGTACAGGATGCAAGCGGAAGGTCATAATGTCGACGGTTATGTATCTGCAAATGTATTT GGTGCGTTTGGAGAGAAAGGAGATGCAGGGGAGGGTAAGAGAGGGGTTCTGGGGCACGCAGTTCATCTGGATACTACTTGA
AA sequence Show only first row Show all	>Lus10039594 pacid=23165357 polypeptide=Lus10039594 locus=Lus10039594.g ID=Lus10039594.BGIv1.0 annot-version=v1.0 MIPLAAVLSFSLLSQTPARVALHPLHSHYFPTKLTSKTGRNRAATSVNLPCFSNKDDFSSHYLDDTPDFQSCEEADGPGCRSSQPWSRSVDSVLLGQWLQ SCDKVKDVKMVHAVSYRCSRSFAVYVNNNLISAYSRLGELDHARKTFDKMPHRNVVSWTAMIDAYSNAGLDDEALSLLIKCIESGIGANGKTFVCGLNLC SRRLDFDLGRQVHASIMKENWRNVIVDSAIVHFYAKSGDLAAAFCAFNSMVERDVVSWTTMIAACSQQGLGIEAFGLLSQMLSSGLSPNEFTVCSVLKAC GEENALKLGRQLHGSILKKMWEHDVFTGSSLVDMYAKCGKILDARKVFNIMRRKNTVTWTSLIAGYARAGLGEEAVSLFRLMQKRKVSRSNLTTVSILKA CGSILALKTGKEVHAQIIKDSVQSNEYVGSSLVWFYCKCSEWQTAAKVFQQMSLQSVVSWTAMISGFADLGHESEALGFLIEMMEEGVQPNSFTYSSALK ACAGLNSVQQGKSIHSFASKTKSMGNVYVGSALVHMYAKGGYLPEAIQVFDEMPERNRVSWKSMITGYTKNGLFEQALRLMYRMQAEGHNVDGYVSANVF GAFGEKGDAGEGKRGVLGHAVHLDTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	0	1
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	1.0	0.9486
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	2.0	0.9068
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	2.0	0.8805
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	5.5	0.8711
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	6.0	0.8816
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10030513 [exp]	6.6	0.8352
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10003575 [exp]	7.1	0.8267
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	7.2	0.8510
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10016476 [exp]	7.9	0.8367
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10024866 [exp]	8.0	0.8601

Compare expression of checked genes

Lus10039594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.