Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 462 / 5e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 461 / 2e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 395 / 1e-138 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 386 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 385 / 4e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 370 / 1e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 370 / 1e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 282 / 6e-94 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G15950 275 / 3e-91 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT5G58490 261 / 5e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029484 [exp] 483 / 6e-174 AT5G19440 355 / 1e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 464 / 1e-165 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 426 / 2e-150 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 423 / 2e-149 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 420 / 2e-148 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 407 / 4e-143 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 379 / 5e-132 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 380 / 3e-125 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10019732 [exp] 333 / 3e-114 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057600 [exp] 544 / 0 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 479 / 9e-172 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 472 / 6e-169 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 443 / 2e-157 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 417 / 6e-147 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 286 / 3e-95 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 279 / 1e-92 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 279 / 1e-92 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 279 / 1e-92 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 278 / 2e-92 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10039595 pacid=23165026 polypeptide=Lus10039595 locus=Lus10039595.g ID=Lus10039595.BGIv1.0 annot-version=v1.0 ATGAGCGAGGAGGAAGGGAAAGGAAAGGTAGTCTGTGTGACTGGAGCTTCAGGCTACATAGCCTCATGGCTGGTGAAGTTACTTCTTCAACGAGGATACA CTGTTAAAGCTACAGTCCGTGACCCAAATGATGCCAAGAAGACTGAACATTTGCTTGCACTTGAGGGAGCCAAGGAGCGGTTGAAACTGTTCAAGGCAGA CTTGCTGGATGAAGGATCATTTGATAATGTTGTTGAGGGATGTGAAGGTGTTTTCCACACCGCTTCCCCATTTTTCTTCAATGCGACTGATCCTCAGGTT GAACTGGTTGACCCCGCGGTGAAGGGAACTCTCAATGTACTAACATCATGCGCTAAAGTCCCTTCAATCAAGAGAGTGGTCATCACATCATCCATGGCAG CAGTTGCATTCAATGGAAGGACTCTTGCTCCTGATGTGGTAATTGATGAGACTTGGTTCTCTAATGCAGAATTCTGCAGAAAATCAAAGTTGTGGTATAT GCTGGCGAAAACACTGGCTGAAGAACTTGCTTGGAAGTTCTCAAAAGAGAATGGTATGGATATAGTTTCACTAAATCCAGGACTTGTAATTGGCCCTCTC TTGCAACCGACATTGAATACGAGCGCAGAGTCAGTTCTGAACCTTGTAAAGGGGGTGGAAAAGTATCCAAACACAACATACAGGTGGGTAGATGTTAGAG ATGTTGCTTATGCCCATATATATGCCATGGAGAATCCTTCAGCTGGTGGAAGATACTGCTTAGTCGGAGCAGTTTTACATGCTTCTGAAGCTGTGAAGAT GTTGCATGAGCTTTTCCATGACCTCAACATCCCTCAAGAATGTGCGGATGACAAGCCACCTATGGCGATATATCAAGTGTCGAAAGAAAGAGTTGAAAGC CTAGGCGTCAAATACAGTCCTCTCAAGACTAGCTTGAAAGACACAGTGGAAAGCTTGAAGGAAAAGAAGTTATTTTGA
AA sequence Show only first row Show all	>Lus10039595 pacid=23165026 polypeptide=Lus10039595 locus=Lus10039595.g ID=Lus10039595.BGIv1.0 annot-version=v1.0 MSEEEGKGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDAKKTEHLLALEGAKERLKLFKADLLDEGSFDNVVEGCEGVFHTASPFFFNATDPQV ELVDPAVKGTLNVLTSCAKVPSIKRVVITSSMAAVAFNGRTLAPDVVIDETWFSNAEFCRKSKLWYMLAKTLAEELAWKFSKENGMDIVSLNPGLVIGPL LQPTLNTSAESVLNLVKGVEKYPNTTYRWVDVRDVAYAHIYAMENPSAGGRYCLVGAVLHASEAVKMLHELFHDLNIPQECADDKPPMAIYQVSKERVES LGVKYSPLKTSLKDTVESLKEKKLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	0	1
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	2.6	0.9227
AT5G47730			Sec14p-like phosphatidylinosit...		Lus10039106 [exp]	2.8	0.9202
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	3.7	0.8945
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10014627 [exp]	5.5	0.9142
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	5.7	0.9149
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	7.1	0.8984
AT4G34270			TIP41-like family protein (.1)		Lus10020231 [exp]	8.5	0.8897
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	9.5	0.9002
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	11.7	0.9185
AT3G20920			translocation protein-related ...		Lus10030136 [exp]	12.8	0.8941

Compare expression of checked genes

Lus10039595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.