Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52820 771 / 0 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 131 / 3e-34 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 127 / 1e-32 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 107 / 1e-24 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G16750 105 / 6e-24 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT4G15900 99 / 3e-22 PRL1 pleiotropic regulatory locus 1 (.1) AT2G43770 97 / 4e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 97 / 4e-21 TAF5 TBP-associated factor 5 (.1) AT4G34460 95 / 4e-21 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT1G71840 94 / 1e-20 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029493 [exp] 919 / 0 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10014674 [exp] 141 / 6e-38 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 140 / 8e-38 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 122 / 7e-31 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 115 / 2e-28 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 107 / 1e-24 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 103 / 2e-23 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024972 [exp] 102 / 7e-23 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10040282 [exp] 102 / 9e-23 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058000 [exp] 867 / 0 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.002G051900 [exp] 137 / 1e-36 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 134 / 2e-35 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 117 / 4e-29 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 115 / 6e-28 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G050100 [exp] 108 / 4e-25 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 107 / 8e-25 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.010G012800 [exp] 102 / 5e-23 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.013G116900 [exp] 100 / 1e-22 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.019G096900 [exp] 99 / 1e-22 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0072 [flax] [poplar] Ubiquitin PF08154 [flax] [poplar] NLE NLE (NUC135) domain
Representative CDS sequence Show only first row Show all	>Lus10039597 pacid=23165239 polypeptide=Lus10039597 locus=Lus10039597.g ID=Lus10039597.BGIv1.0 annot-version=v1.0 ATGGAGGCCGAAACAGTAGTGAATAATGTCATATGCCAGTTCACTGACCCAGAAGGGAACCTCCAAGGACCTCCTTTATACCTCCCACAGAATGCCGGCC CTCCTCAGCTTCAACAAATCGTCAATCAGCTTCTAAACAATACAGAGAAGTTGCCATATGCATTCTACATATCAAATCAGGAGCTCCTCGTGACTCTGGA AACTTACTTACAGAAAAACAAAGTTTCTGTGGAGAAGGTACTGTCCATAGTTTATCAGCCACAAGCTGTCTTCCGAATCCGCCCTGTTAGCCGCTGTTCT GCTACTATAGCTGGTCACTCTGAGGCTGTCCTTTCAGTTTCCTTTAGTCCCGATGGACGGCAGTTGGCTAGTGGCTCCGGGGATACCACTGTGCGCATTT GGGATCTTAACACACAGACCCCTATGTTTACTTGTACAGGACACAAAAATTGGGTTCTCTGCATTGCATGGTCACCAGATGGTAAGTATCTTGTGAGTGG GAGCAAGTCTGGAGAGCTTCAGTGTTGGGATCCTCAAACAGGAAATCCATCAGGCAATCAACTTATGGGCCACAAGAAATGGATTACTGGAATCTCTTGG GAACCATTGCACTTAAGCTCTCCTTGCAATCGTTTTGTTACTGCTAGCAAAGATGGTGATGCAAGGATTTGGGATACGACGTTGAGAAGAAGTGTTATTT GTCTTAGTGGACACAAGCTTGCTGTAACTTGTGTTAAGTGGGGTGGAGACGGAATAATTTATACTGGGTCGCATGATTGTACCATCAAAATGTGGGAAAC TACCCAAGGGAAGCTGATTCGTGAGCTGAAGGGTCATGGCCATTGGGTTAACTCTCTTGCTTTGAGTACTGAATACGTTCTCCGCACTGGAGCATTTGAT CATACTGGCAAAACATATTCATCGCCAGAGGAAATGAATAAGGTTGCTCTAGAAAGATACAACAAAATGAAAGGCAATGGCCCTGAAAGGCTAGTCTCAG GTTCTGATGATTTCACCATGTTCCTCTGGGAACCTGCTGTCAACAAGCACCCAAAAACACGCATGACAGGTCATCAACAGCTTGTAAATCATGTTTACTT TTCACCTGATGGGCAATGGGTGGCTAGTGCATCTTTTGACAAGTCTGTCAAGTTGTGGAATGGCATTACAGGGCAATTTGTTGCGGCTTTTAGAGGCCAC GTAGGTCCTGTTTATCAGATCAGCTGGTCTGCCGATAGTAGGCTTCTTTTGAGTGGGAGCAAAGACTCCACCCTGAAGGTTTGGGATATACGGACCCGCA AGTTGAAGCAAGACCTTCCAGGTCACGAGGATGAGGTATTTGCTGTCGATTGGAGTCCGGATGGTGAGAAAGTGGCTTCTGGAGGCAAAGACCGAGTATT GAAATTATGGATGGGCTAG
AA sequence Show only first row Show all	>Lus10039597 pacid=23165239 polypeptide=Lus10039597 locus=Lus10039597.g ID=Lus10039597.BGIv1.0 annot-version=v1.0 MEAETVVNNVICQFTDPEGNLQGPPLYLPQNAGPPQLQQIVNQLLNNTEKLPYAFYISNQELLVTLETYLQKNKVSVEKVLSIVYQPQAVFRIRPVSRCS ATIAGHSEAVLSVSFSPDGRQLASGSGDTTVRIWDLNTQTPMFTCTGHKNWVLCIAWSPDGKYLVSGSKSGELQCWDPQTGNPSGNQLMGHKKWITGISW EPLHLSSPCNRFVTASKDGDARIWDTTLRRSVICLSGHKLAVTCVKWGGDGIIYTGSHDCTIKMWETTQGKLIRELKGHGHWVNSLALSTEYVLRTGAFD HTGKTYSSPEEMNKVALERYNKMKGNGPERLVSGSDDFTMFLWEPAVNKHPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGITGQFVAAFRGH VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTRKLKQDLPGHEDEVFAVDWSPDGEKVASGGKDRVLKLWMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52820			WD-40 repeat family protein / ...		Lus10039597 [exp]	0	1
AT5G52820			WD-40 repeat family protein / ...		Lus10029493 [exp]	1.0	0.9570
AT1G42440			unknown protein		Lus10030752 [exp]	3.7	0.9158
AT1G26370		RID1	RNA helicase family protein (....		Lus10036917 [exp]	6.3	0.8640
AT4G35910			Adenine nucleotide alpha hydro...		Lus10018066 [exp]	8.8	0.8750
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	9.9	0.8647
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	10.7	0.8839
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	11.0	0.8449
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	12.1	0.8870
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	13.9	0.8379
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	15.7	0.8344

Compare expression of checked genes

Lus10039597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.