Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13690 1155 / 0 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029494 [exp] 1550 / 0 AT5G13690 1174 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10043468 [exp] 1016 / 0 AT5G13690 997 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10034116 [exp] 953 / 0 AT5G13690 933 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058100 [exp] 1248 / 0 AT5G13690 1208 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Potri.012G075932 [exp] 1036 / 0 AT5G13690 1020 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05089 [flax] [poplar] NAGLU Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
Representative CDS sequence Show only first row Show all	>Lus10039598 pacid=23165046 polypeptide=Lus10039598 locus=Lus10039598.g ID=Lus10039598.BGIv1.0 annot-version=v1.0 ATGAAGATGGGGAAACCCACCATGTCCAATCTCAACTCTCTTCTCTCCTTCACTACACTGGCAGTCACCTGGATTCTGTTATTCCATTCCCAAGTGGGTC TCGCAATGTCTGGAGGAAGAAGAGATGCTATAGAGTCTCTAGTTTCCCGTTTGGATTCTCGAAAGTCATCTTCATCAGTTCAAGAATCTGCAGCTCGTGG CGTTCTCATAAGATTGTTTCCTGCTTACCAGAACAGCTTTGACTTCAAGATTGTGTCCAAGGAATCTTGCAGCGGAAAGAGTTGTTTTCTAATAGGAAAT CAAGCCAAACCAAATCTGAATGGGGCTGAGATCATCATTAAAGGAACCACAGCAGTGGAAATCGTATCAGGCCTTCATTGGTACATAAAGTATTGGTGTG GTGCTCATGTTTCATGGGACAAGACTGGTGGCATTCAGATTGCTTCAATTCCCAAACCTGGATCATTGCCTCGTGTGAAGAAGGGAGGAATAATAATTCA GAGGCCGGTTCCCTGGAACTACTACCAAAATGTTGTTACATCAAGCTATTCTTATGTATGGTGGAACTGGGAGAGATGGGAGAAAGAGATAGATTGGATG GCTCTCCAAGGCATTAATCTGCCTTTGGCGTTCAATGGACAAGAAGCCATTTGGCAGAAAGTTTTCATGAAATTCAACATTTCTGCACATGATTTGGACG GTTTCTTTGGTGGACCAGCCTTCCTGGCTTGGGCTCGCATGGGGAATTTACATGGCTGGGGTGGCCCTTTATCACAATCTTGGCTGGATGGACAGTTGAC CTTACAAAAACAGATACTCGCACGGATGCTAGAGCTGGGCATGACCCCAGTACTGCCATCATTTTCTGGCAACGTTCCAGCTGCTTTGAGCAAGGTTTTC CCTTCTGCTAAAATAACCAGACTTGGAGACTGGAACACTGTGAACAAAAACCCGCGTTGGTGTTGCACATACCTTCTTGATCCTTCTGATCCTCTATTCG TTGAAATGGGGAGGGCTTTTATAAAGCAGCAGATTGAAGAATATGGAGATGTAACGGATATCTACAACTGTGATACATTCAATGAAAATTCCCCGCCTAC AGACGATCCAGAATATATCACTTCTTTGGGTGCTGCTGTCTACAAAGCAATGTCTGCCGGTGATCAGAACGCCGTGTGGCTAATGCAAGGTTGGCTTTTC TACTCAGACTTTGTATTCTGGCAGCCACCTCAAGTGAAGGCACTTTTACATTCTGTTCCATTTGGGAAAATGATAGTTCTTGATCTATTTGCGGAGTCCA AGCCAATATGGGAGAGTTCCTCCCAATTCTACGACACTCCATACGTTTGGTGCATGCTGCATAATTTTGGCGGAAACCTTGAAATGTATGGCATGTTGGA TTCAATAGCTTCAGGTCCTGTTGATGCCCGTGTCAGTGAGAATTCAACCATGGTTGGCGTTGGGTTGTGCATGGAAGGCATAGAGCACAACCCCGTTGTG TATGAGCTAATGTCTGAAATGACATTCCGGGAAGAAAAAGTTCACGTTCTTGAATGGCTGAAGACCTATGCTCTAAGAAGATATGGCAAAGCAGTTCCTC AGATTGATGAAGCCTGGGACATTCTCTATCACACCATTTACAACTGCACAGATGGAGTTGCTGACCATAACACGGACTTCATTGTAAAACTTCCAGACTG GGATCCATCGTTGCATTCTGATAACTCGAAACAAGACAAGATACACACCCTTCATATTGGGGGAAGATTCCTATTCCAGCTCCAAAGTTCTGATTTGCCA GAGGCGCATATATGGTATTCAAATCAGGATACAGTGAAAGCCTTGCAATTATTCCTCGGAGCTGGAGATAAACTTAACGGAAGCCTCACATACAGATATG ACTTGGTGGACTTGACGCGGCAAGTTCTGTCCAAGCTCGCGAATGAAGTATACACCAAAGCCATTCTTGCCTTCCGGAACAAGGATGTTAGTTCTCTGAA ACATTATAGCAAGAAATTCCTGGAGCTCATCAAGGACATTGATGTGCTACTTGCTTCCGATGATAACTTCCTACTCGGCACATGGCTCGAAAGTGCAAAA GCACTTGCTGACAACCCAATCGACAGCAAGCTGAATGAGTGGAACGCAAGAACACAAGTAACAATGTGGTATGATACAACAGAAGCCATACAGAGCAAGC TCCATGACTATGCCAACAAATTCTGGAGCGGGTTGCTGGAAGACTACTACCTTCCCCGAGCTGCGACTTACTTTGATCACCTGATAAGGACTTTAGAGAA GAATGAAGAGTTCTCGTTGGTGGATTGGAGGGTAAAATGGATTGGATTATCAAACAAATGGCAAACAGGTTCAAATCTGTATCCAGTCAAAGCTGAAGGG GACGCTCTTTCTATTTCTAGATCACTGTATGAAAAGTACTTTAGTTGA
AA sequence Show only first row Show all	>Lus10039598 pacid=23165046 polypeptide=Lus10039598 locus=Lus10039598.g ID=Lus10039598.BGIv1.0 annot-version=v1.0 MKMGKPTMSNLNSLLSFTTLAVTWILLFHSQVGLAMSGGRRDAIESLVSRLDSRKSSSSVQESAARGVLIRLFPAYQNSFDFKIVSKESCSGKSCFLIGN QAKPNLNGAEIIIKGTTAVEIVSGLHWYIKYWCGAHVSWDKTGGIQIASIPKPGSLPRVKKGGIIIQRPVPWNYYQNVVTSSYSYVWWNWERWEKEIDWM ALQGINLPLAFNGQEAIWQKVFMKFNISAHDLDGFFGGPAFLAWARMGNLHGWGGPLSQSWLDGQLTLQKQILARMLELGMTPVLPSFSGNVPAALSKVF PSAKITRLGDWNTVNKNPRWCCTYLLDPSDPLFVEMGRAFIKQQIEEYGDVTDIYNCDTFNENSPPTDDPEYITSLGAAVYKAMSAGDQNAVWLMQGWLF YSDFVFWQPPQVKALLHSVPFGKMIVLDLFAESKPIWESSSQFYDTPYVWCMLHNFGGNLEMYGMLDSIASGPVDARVSENSTMVGVGLCMEGIEHNPVV YELMSEMTFREEKVHVLEWLKTYALRRYGKAVPQIDEAWDILYHTIYNCTDGVADHNTDFIVKLPDWDPSLHSDNSKQDKIHTLHIGGRFLFQLQSSDLP EAHIWYSNQDTVKALQLFLGAGDKLNGSLTYRYDLVDLTRQVLSKLANEVYTKAILAFRNKDVSSLKHYSKKFLELIKDIDVLLASDDNFLLGTWLESAK ALADNPIDSKLNEWNARTQVTMWYDTTEAIQSKLHDYANKFWSGLLEDYYLPRAATYFDHLIRTLEKNEEFSLVDWRVKWIGLSNKWQTGSNLYPVKAEG DALSISRSLYEKYFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10039598 [exp]	0	1
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10029494 [exp]	1.0	0.8902
AT1G26300			BSD domain-containing protein ...		Lus10036831 [exp]	7.7	0.8447
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	11.3	0.8748
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10014824 [exp]	14.4	0.8405
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	17.7	0.8485
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	18.2	0.8308
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	18.4	0.8483
AT3G26020			Protein phosphatase 2A regulat...		Lus10006440 [exp]	19.7	0.7894
AT1G59650		CW14	Protein of unknown function (D...		Lus10036683 [exp]	20.4	0.7722
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	21.4	0.8590

Compare expression of checked genes

Lus10039598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.