Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 692 / 0 ATPAO1, APAO polyamine oxidase 1 (.1) AT1G65840 173 / 4e-48 ATPAO4 polyamine oxidase 4 (.1) AT3G59050 157 / 3e-42 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 141 / 1e-36 ATPAO2 polyamine oxidase 2 (.1) AT1G62830 124 / 6e-30 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 115 / 3e-27 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G16310 102 / 8e-23 LDL3 LSD1-like 3 (.1) AT3G13682 98 / 2e-21 LDL2 LSD1-like2 (.1) AT4G29720 71 / 5e-13 ATPAO5 polyamine oxidase 5 (.1) AT3G23530 47 / 3e-05 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029495 [exp] 815 / 0 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10019725 [exp] 374 / 4e-125 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1) Lus10041898 [exp] 369 / 7e-121 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10042168 [exp] 353 / 4e-117 AT5G13700 337 / 4e-111 polyamine oxidase 1 (.1) Lus10042127 [exp] 330 / 8e-109 AT5G13700 320 / 5e-105 polyamine oxidase 1 (.1) Lus10020726 [exp] 137 / 3e-35 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 137 / 3e-35 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 134 / 5e-34 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10015996 [exp] 129 / 2e-31 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058200 [exp] 823 / 0 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1) Potri.001G263400 [exp] 806 / 0 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.012G079500 [exp] 417 / 6e-142 AT5G13700 400 / 7e-136 polyamine oxidase 1 (.1) Potri.015G074600 [exp] 412 / 3e-140 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.017G144001 [exp] 166 / 1e-45 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 162 / 3e-44 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 132 / 2e-33 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.002G055300 [exp] 128 / 5e-32 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.011G127600 [exp] 121 / 4e-29 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.010G227200 [exp] 115 / 7e-27 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10039599 pacid=23165177 polypeptide=Lus10039599 locus=Lus10039599.g ID=Lus10039599.BGIv1.0 annot-version=v1.0 ATGGATTCTCCTAACCGTTCCTCTGTCATCGTGATCGGCGCCGGCGTCTCCGGTATCTCGGCTGCGAAAGTTCTGGCTGAGAATGGGATTGAGGACCTGG TTATTTTGGAAGCTACGGATCGTATCGGAGGAAGGATCAGGAAAGAGAATTTCGGCGGCGTTCCCGTCGAGCTTGGAACCGGTTGGATCGCCGGAATTGG CGGTAAAGAGGCTAACCCGGTTTGGGAGCTGGCTAAAAAGTCGGTCCTCCGAACTCTCTTCTCGGACTACAGCAATGCCCGTTATAATATCTACGATCAG AGCGGGAAGATCTTTCCCAGCAGTTTGGCCGCCGACTCTTACAGGAAAGCGGTGGAATCCGCTGTGGAAAAGCTGAGGAAACAAGCGGAGGCAGTCAATC AAGCTGGCGAAATGGTTGAACAACCGACTTGGTGGTCGCCAAAGACGCCTATAGAGCTCGCAATAGACTTCATCCTCCATGATTTTGAGATGGCAGAAGT AGAGCCGATATCAACATTTGTCGATTTTGGAGAAAGAGAGTTTCTAGTTGCAGATGAAAGAGGGTATGACTGTTTGTTATACAAAATGGCTGAGGAGTTC CTTTTTACCTCAGAGGGTAAAATCTTGGACAATCGCCTCAAACTAAATCAGGTTGTCAGGGAAATACAGCACTCTGGAGACGGCGTTACGGTTAAAACAG AGGATGGTTGCGTCTACGAGGCCAATTATGTGATTTTGTCCGTTAGTATTGGTGTTCTTCAAAGTAACCTCATTTCATTTTCCCCTCCTTTGCCCAGATG GAAAACAGAACCTATAGAGAAATGTGGTGTGATGGTATACACGAAGATTTTCCTCAAGTTTCCCTATCAGTTCTGGCCATGTGGCCCCGAGAAAGAATTT TTTATCTACGCCCACGATCGGAGAGGATACTACACTTTTTTGCAGCACATGGAGAATGCATACCCAGGTTCCAATATCCTGGTTGTAACCCTGACAAATG GGGAGTCGAAGCGTGTGGAGGCTCAATCGGATGAAGAGACGATGAAAGAAGCCATGAAAGTACTTAGAGACATGTTTGGTCCGGAAGTTCCTGATGCCAC AGATATACTTGTCCCACGCTGGTACACCAACAGATTCCAGCGTGGCTGCTACAGTGATTACCCTATGATCTGCAACAACCAAGAAGTCCAGAAAATCAAG GCTCCGGTTGGACGCATTTTCTTCACAGGAGAACATACAAGTGAAAGGTTTAGTGGTTACGTCCATGGTGGATACCTTGCTGGTATTGATACGAGTATGT CGGTGTTAGAAGACATCAAATTGAACACAGAAAAGGAAACAGAGAACCAAACCTTCTTGTTAGAGCCTTTCTTAGCATCATTAAGTCTGACGACACAGAC GGAAGCAGCAGTCTCAAATCTACACAAATGTGACATCCCTACTCAGCTATGTATAGGTGGAAATCTCGGCATGTCGGAAGGCATATTATGA
AA sequence Show only first row Show all	>Lus10039599 pacid=23165177 polypeptide=Lus10039599 locus=Lus10039599.g ID=Lus10039599.BGIv1.0 annot-version=v1.0 MDSPNRSSVIVIGAGVSGISAAKVLAENGIEDLVILEATDRIGGRIRKENFGGVPVELGTGWIAGIGGKEANPVWELAKKSVLRTLFSDYSNARYNIYDQ SGKIFPSSLAADSYRKAVESAVEKLRKQAEAVNQAGEMVEQPTWWSPKTPIELAIDFILHDFEMAEVEPISTFVDFGEREFLVADERGYDCLLYKMAEEF LFTSEGKILDNRLKLNQVVREIQHSGDGVTVKTEDGCVYEANYVILSVSIGVLQSNLISFSPPLPRWKTEPIEKCGVMVYTKIFLKFPYQFWPCGPEKEF FIYAHDRRGYYTFLQHMENAYPGSNILVVTLTNGESKRVEAQSDEETMKEAMKVLRDMFGPEVPDATDILVPRWYTNRFQRGCYSDYPMICNNQEVQKIK APVGRIFFTGEHTSERFSGYVHGGYLAGIDTSMSVLEDIKLNTEKETENQTFLLEPFLASLSLTTQTEAAVSNLHKCDIPTQLCIGGNLGMSEGIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	0	1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	1.0	0.9666
					Lus10033269 [exp]	2.8	0.9661
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	5.5	0.9528
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	5.5	0.9469
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10010761 [exp]	5.5	0.9405
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	6.3	0.9501
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	6.5	0.9359
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	6.5	0.9454
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	7.2	0.9416
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	10.8	0.9442

Compare expression of checked genes

Lus10039599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.