Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13710 159 / 1e-48 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 61 / 2e-11 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 59 / 1e-10 SMT3 sterol methyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029498 [exp] 230 / 5e-77 AT5G13710 380 / 2e-133 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10023995 [exp] 62 / 7e-12 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10005625 [exp] 57 / 7e-10 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058600 [exp] 160 / 1e-48 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.001G263700 [exp] 159 / 1e-48 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 122 / 2e-34 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G245800 [exp] 59 / 9e-11 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 59 / 1e-10 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039600 pacid=23165361 polypeptide=Lus10039600 locus=Lus10039600.g ID=Lus10039600.BGIv1.0 annot-version=v1.0 ATGTCGAAAGCTGGCGCATTGGATCTTGCTTCTGGTCTTGGTGGCAAGATCGAGAAGAAGGAAGTTCTTTCCGCTGTCGAGCAGTACGAGAACTACCACA GCTTACATGGAGGTGCAGATGAAGAGAGAAAATCCAACTACACTGACATGGTGAATAAGTATTATGACCTGGCAACTAGCTTTTATGAGTTTGGCTGGGG AGAATCTTTCCATTTTGCTCATAGATTCAATGGCGAATCTCTTCGAGAGAGCATCAAGCGGCATGAACACTTTCTAGCCCTGCAACTTGGTCTGAAACCT GGACAAAAGGCCGAAATAGAGGTTGGTGATGGTCTTCCTGACATTAGGTCTACCACACAATGTATCGAGGCTCTGGAAAAAGCCGGTTTCGAGGCAAGCC ATGGTTTCCCCCCATACATCTTATGTATGCTGACTGTCTGTTTTGATAAGGTTCAGATTAAGTGA
AA sequence Show only first row Show all	>Lus10039600 pacid=23165361 polypeptide=Lus10039600 locus=Lus10039600.g ID=Lus10039600.BGIv1.0 annot-version=v1.0 MSKAGALDLASGLGGKIEKKEVLSAVEQYENYHSLHGGADEERKSNYTDMVNKYYDLATSFYEFGWGESFHFAHRFNGESLRESIKRHEHFLALQLGLKP GQKAEIEVGDGLPDIRSTTQCIEALEKAGFEASHGFPPYILCMLTVCFDKVQIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10039600 [exp]	0	1
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	1.0	0.9293
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	2.0	0.8486
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	6.9	0.8145
AT5G58030			Transport protein particle (TR...		Lus10003634 [exp]	7.5	0.8059
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	8.1	0.7486
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	10.0	0.8139
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031896 [exp]	10.1	0.8113
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	12.1	0.7696
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	13.0	0.8368
AT2G07340		PFD1	PREFOLDIN 1 (.1.2)		Lus10021609 [exp]	14.1	0.7615

Compare expression of checked genes

Lus10039600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.