Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17510 248 / 9e-77 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) AT1G77680 83 / 4e-18 Ribonuclease II/R family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029500 [exp] 296 / 1e-94 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10025614 [exp] 86 / 3e-19 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10028065 [exp] 86 / 5e-19 AT1G77680 551 / 1e-179 Ribonuclease II/R family protein (.1) Lus10014833 [exp] 79 / 1e-16 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1) Lus10009880 [exp] 51 / 3e-07 AT1G77680 363 / 5e-117 Ribonuclease II/R family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059100 [exp] 268 / 2e-84 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.002G086400 [exp] 81 / 2e-17 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.005G174800 [exp] 76 / 6e-16 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [flax] [poplar] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Lus10039601 pacid=23165076 polypeptide=Lus10039601 locus=Lus10039601.g ID=Lus10039601.BGIv1.0 annot-version=v1.0 ATGGATCCAGTAACAGAAGACTTGAGACGTATGAATGCTGTGGCAAAGATTATGAGGCAAAGGCGAATTGATAGAGGAGCACTAACTCTTGCTTCTGCAG AAGTCAAATTTCAAATTGATACCGAGACTCATGACCCTCTTGATATTGGAATGTACCAGATTCGTGAGGCAAATCAAATGGTAGAAGAGTTCATGCTTGC TGCAAATGTTTCAGTAGCTGAGCAAATCCTTAAACACTTTTCAGACTGTTCGCTGCTAAGGCGTCATCCTAGTCCCACTAAGGATATGCTCGAACCATTG TTGCGCACAGCTAGTTCGATTGGTTTGAACTTGGACGTGTCATCATCAAAAGCACTAGCTGATTCACTTGACCATGCTGTGGGTGATGATCCATATTTGA ACAAGCTAATACGTATAATGGCGACCAGATGTATGTCGCAGTACGGCATAGAAGGTCCAGTTTACCTGAACCCGAAGAGCGAGAAAGGCAGTAGCAGTGG TGGTGAATGGTTTGTCGATGAGCAGCAGCAGAAAATCAAGAAGATAGACGGCAGCGTTAGTTATGGAATTCTGCAGGCCGTAAAGATTCACTTGGAGGTA GTGGAGCCTCAGCCAAACCGGCCTAAACTCCAGCTTTCCCTCCTCTCCTCATCCTCGACATAA
AA sequence Show only first row Show all	>Lus10039601 pacid=23165076 polypeptide=Lus10039601 locus=Lus10039601.g ID=Lus10039601.BGIv1.0 annot-version=v1.0 MDPVTEDLRRMNAVAKIMRQRRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILKHFSDCSLLRRHPSPTKDMLEPL LRTASSIGLNLDVSSSKALADSLDHAVGDDPYLNKLIRIMATRCMSQYGIEGPVYLNPKSEKGSSSGGEWFVDEQQQKIKKIDGSVSYGILQAVKIHLEV VEPQPNRPKLQLSLLSSSST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10039601 [exp]	0	1
AT2G33640			DHHC-type zinc finger family p...		Lus10025157 [exp]	107.5	0.6345
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	178.2	0.5785

Compare expression of checked genes

Lus10039601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.