Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 526 / 0 Protein of unknown function, DUF642 (.1.2) AT2G41800 458 / 6e-162 Protein of unknown function, DUF642 (.1) AT2G41810 457 / 1e-161 Protein of unknown function, DUF642 (.1) AT5G11420 415 / 6e-145 Protein of unknown function, DUF642 (.1) AT4G32460 411 / 1e-143 Protein of unknown function, DUF642 (.1.2) AT5G25460 411 / 2e-143 Protein of unknown function, DUF642 (.1) AT1G80240 384 / 9e-133 Protein of unknown function, DUF642 (.1) AT2G34510 322 / 5e-108 Protein of unknown function, DUF642 (.1) AT1G29980 321 / 6e-108 Protein of unknown function, DUF642 (.1.2) AT5G14150 136 / 1e-36 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029501 [exp] 702 / 0 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 531 / 0 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 527 / 0 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 523 / 0 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 521 / 0 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10019727 [exp] 450 / 2e-159 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10031067 [exp] 447 / 3e-157 AT2G41810 478 / 1e-169 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 434 / 3e-152 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 433 / 6e-152 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263900 [exp] 587 / 0 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 578 / 0 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 521 / 0 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 508 / 0 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 508 / 0 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 437 / 1e-153 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 419 / 8e-146 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 381 / 4e-131 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 380 / 6e-131 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 332 / 8e-112 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10039602 pacid=23165033 polypeptide=Lus10039602 locus=Lus10039602.g ID=Lus10039602.BGIv1.0 annot-version=v1.0 ATGGCTACTACCTACTACTCGTGTCTTCTTCCATTGGTACTAGTACAGCTAGTGCTCTTCTTCTCCAGTGCCTCCTCTGTTCTTGCTGCCAAACCCTTGG ATAGACTGCTTGAAAATGGGAACTTTGAGGAGAGTCCAAACCCTCGCTTCCTGAAGAAAACAGTGCTGCAAGGCAAAAAATCGCTTCCAGGATGGGAAAT CAATGGATTGGTGGAGTACATCTCTGGAGGGCCACAGCCTGGAGGGATGTACTTCCCAGTGGCTCATGGTGTTCATGCTGTTAGGCTTGGTAATGAGGCC TACATCTCACAGTCCATGGTTGTGAAGCCAGGCTCTCTCTATGCACTCACTTTTGGGGCATCCAGAACATGTGCTCAGAATGAGGTCCTGAGGGTTTCAG TCCCACCCCAGACTGGAGATCTGCCCTTGCAGACCTTGTACTCCAGCAATGGTGGAGACACTTATGCTTGGGGGTTTAGAGCTACCGCTAATGTTGTCAA AGTTACTTTCCATAACCCTGGTATCCAAGAGGACCCTGCTTGTGGCCCTCTCATTGATGCTGTTGCCATTAAGGAGATCTTCCCTCCTTTCCCCACTAAA GGTAACTTGGTTAAGAACCCGGGATTTGAGGAAGGACCACACAGGCTGCTGAACACATCAAGTGGAGTCCTCCTCCCTCCAAAGCAAGAGGACGCAACAT CCCCACTCCCGGGATGGATCATCGAGTCGCTCAAAGCCGTGAAGTTCATCGATGCAAAGCACTTCAATGTCCCGTTCGGGCTGGCTGCAGTGGAGCTTGT TGCCGGGAGGGAGAGTGCCATTGCTCAAATCATCAGGACCATCCCAAACAAAGCATACAGCTTGACATTCTCAGTAGGAGATGCCAAGAACGGGTGCCAC GGATCCATGATGGTGGAGGCTTTTGCTGCCAAGGACACCATGAAGGTTCCGTTTGTCTCGGAAGGGAAAGGGAAGTTCAAGACGGTGAGCTTCAAGTTCA CAGCGGTTACAGCAAGGACAAGAATCACTTTCTACAGTTCATACTACCATACAAGGGCTGATGATTTCGGGTCTCTGTGTGGACCTATTGTTGACGAAGT TAGAGTTGTCCCTGTATAA
AA sequence Show only first row Show all	>Lus10039602 pacid=23165033 polypeptide=Lus10039602 locus=Lus10039602.g ID=Lus10039602.BGIv1.0 annot-version=v1.0 MATTYYSCLLPLVLVQLVLFFSSASSVLAAKPLDRLLENGNFEESPNPRFLKKTVLQGKKSLPGWEINGLVEYISGGPQPGGMYFPVAHGVHAVRLGNEA YISQSMVVKPGSLYALTFGASRTCAQNEVLRVSVPPQTGDLPLQTLYSSNGGDTYAWGFRATANVVKVTFHNPGIQEDPACGPLIDAVAIKEIFPPFPTK GNLVKNPGFEEGPHRLLNTSSGVLLPPKQEDATSPLPGWIIESLKAVKFIDAKHFNVPFGLAAVELVAGRESAIAQIIRTIPNKAYSLTFSVGDAKNGCH GSMMVEAFAAKDTMKVPFVSEGKGKFKTVSFKFTAVTARTRITFYSSYYHTRADDFGSLCGPIVDEVRVVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	0	1
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10008627 [exp]	1.4	0.9568
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	2.8	0.9628
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10040590 [exp]	4.0	0.9507
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	4.6	0.9551
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	5.5	0.9465
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	7.2	0.9540
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	8.1	0.9308
AT1G23965			unknown protein		Lus10030844 [exp]	9.2	0.9322
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018031 [exp]	9.5	0.9509
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10014903 [exp]	9.8	0.9082

Compare expression of checked genes

Lus10039602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.