Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52070 61 / 5e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029504 [exp] 222 / 3e-76 AT3G52070 62 / 1e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059100 [exp] 124 / 9e-38 AT3G52070 67 / 2e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039603 pacid=23165150 polypeptide=Lus10039603 locus=Lus10039603.g ID=Lus10039603.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTCTTTCAGCTACCCTCTACATCAATCATCATCTTCATAGAAGCACCAATAACAGCTTCATCCATCAACCCAGCTGTTGTCCAAGGAGGC CTACTACAGTTGTCATTGCTTGCCATAGAGGAACAACTTCTGGAGGAACAACAACAAAGGGAAGAAAAGAGTCAAAGCAAGAGAAGCAATTGTTGAGCGA GATGTTGATAGGCAGTGTGGAGAAGTTCGGGAAAGGATTGAAAGAGAGTTTGAGTCCTAAACAAAAAGGCGATTGGAAAGATGTTGTGTTGATGAGTTTA TCATTTGCTGTGTATGTCTACATGTCTCAGCAGCTTGTCTGTGCCTATTGTCTCTGGAAGTCCATGATGAAGTAA
AA sequence Show only first row Show all	>Lus10039603 pacid=23165150 polypeptide=Lus10039603 locus=Lus10039603.g ID=Lus10039603.BGIv1.0 annot-version=v1.0 MAAALSATLYINHHLHRSTNNSFIHQPSCCPRRPTTVVIACHRGTTSGGTTTKGRKESKQEKQLLSEMLIGSVEKFGKGLKESLSPKQKGDWKDVVLMSL SFAVYVYMSQQLVCAYCLWKSMMK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52070			unknown protein		Lus10039603 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	1.4	0.9378
AT3G52070			unknown protein		Lus10029504 [exp]	2.4	0.9120
					Lus10012544 [exp]	3.0	0.9045
AT2G40435			unknown protein		Lus10029251 [exp]	3.7	0.8923
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	4.0	0.9033
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	8.2	0.8675
AT1G66930			Protein kinase superfamily pro...		Lus10026759 [exp]	9.6	0.8570
AT2G01870			unknown protein		Lus10009946 [exp]	11.0	0.9033
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015751 [exp]	13.2	0.8929
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	13.2	0.8490

Compare expression of checked genes

Lus10039603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.