Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21640 326 / 3e-110 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G15030 189 / 7e-58 unknown protein AT3G25230 92 / 3e-20 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 86 / 5e-18 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G58450 74 / 1e-15 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G54010 73 / 7e-14 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT5G21990 67 / 9e-12 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15790 64 / 5e-11 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT1G56440 52 / 3e-07 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G30480 50 / 1e-06 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029505 [exp] 385 / 5e-134 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10029514 [exp] 175 / 8e-54 AT4G15030 169 / 4e-53 unknown protein Lus10002338 [exp] 94 / 1e-20 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 92 / 3e-20 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 92 / 6e-20 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 91 / 9e-20 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10019379 [exp] 78 / 2e-15 AT5G21990 658 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036162 [exp] 73 / 9e-14 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10023860 [exp] 67 / 6e-12 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059200 [exp] 360 / 3e-123 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 355 / 3e-121 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G266200 [exp] 189 / 4e-58 AT4G15030 310 / 4e-107 unknown protein Potri.002G248300 [exp] 93 / 2e-20 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 85 / 9e-18 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 84 / 2e-17 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G190600 [exp] 84 / 3e-17 AT5G21990 693 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G151700 [exp] 82 / 7e-17 AT5G21990 700 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G033400 [exp] 76 / 6e-15 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G178900 [exp] 68 / 8e-13 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] PF09725 [flax] [poplar] Fra10Ac1 Folate-sensitive fragile site protein Fra10Ac1
Representative CDS sequence Show only first row Show all	>Lus10039604 pacid=23165258 polypeptide=Lus10039604 locus=Lus10039604.g ID=Lus10039604.BGIv1.0 annot-version=v1.0 ATGACCTCGTTTGCCCCTCTGAAAACTGCAATCTATGACCGGGAAGCTCGCAAACAGCAATACCAAGCTCACGTCCGAGGCCTCAACGCATACGATCGAC ACAATAAGTTTGTCAACGATTACGTTAAATTCTATGGGAATGAAAAATCTAGCAATGTCAAATTGCCAGTTAAGACAGACCAGGACACTCTAAGAGAAGG TTACCGATACTGTATAGCTGACATGTCAATTTATAAGACTGGCAAGATAGGTTTGAGATGGAGGACTGAAAAAGAAGTCATTTCTGGTAAAGGGCAGTTC AAATGTGGGAACAAACATTGTGATGAGGGAAATGGATTGGCAAGCTACGAGGCAATACACTACAGGGCATGGACTGAAAGCACACGACACAAATTCGACG ATACATGGTTGGAGCAACGACCACTTGAAATGATTATTGGGAAAGGTATTTCTGCTTCTTCCGGTACTTTGAAGGGGAAAGCTCGTAGTGATATGACCGT CGAAGAGAGGATTGGATCAGCAGACAGAAGAAAGATGGATGGAAATAATTTATTCAAGGAAGAAAAGCTTGAGGAGGCCATGCAACAATATGAAATGGCC ATTGCGTATATGGGTGATGACTTCATGTTTCAACTGTTTGGCAAATATCGGGATATGGCGTTGGCTGTTAAGAATCCGTGTCACCTTAACATGGCAGCAT GTTTGATAAAACTCAAGCACTACGATGAAGCTATATCACAGTGCAGTATTGTACTTAGCGAGGAGGAAAACAACGTGAAAGCATTGTACAGGAGAGGAAA AGCCAAAGCCGAACTAGGGCAAACTGAGGCTGCGAGAGAAGACTTCCAAAAGGCGAGGAAATATGCACCTGAAGACAAGGCCATTGTGAAGGAGTTGCGG CAACTTGCTGAGCATGACAAGGCTGTGTATCAGAAGCAAAAAGAGATATACAAAGGCATATTTGGACCGCCACCGCCTCCTCCAAAACCTAAGAATACTA GTCTTGTCATCCGTTTCTGGCAGTGGCTGATTCTCATTTGGCAGTCTTTCCTGGCCCTAATCACCCGGCCGCTCAGTCGCGAATCACACAAAGCTGAGTA G
AA sequence Show only first row Show all	>Lus10039604 pacid=23165258 polypeptide=Lus10039604 locus=Lus10039604.g ID=Lus10039604.BGIv1.0 annot-version=v1.0 MTSFAPLKTAIYDREARKQQYQAHVRGLNAYDRHNKFVNDYVKFYGNEKSSNVKLPVKTDQDTLREGYRYCIADMSIYKTGKIGLRWRTEKEVISGKGQF KCGNKHCDEGNGLASYEAIHYRAWTESTRHKFDDTWLEQRPLEMIIGKGISASSGTLKGKARSDMTVEERIGSADRRKMDGNNLFKEEKLEEAMQQYEMA IAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKHYDEAISQCSIVLSEEENNVKALYRRGKAKAELGQTEAAREDFQKARKYAPEDKAIVKELR QLAEHDKAVYQKQKEIYKGIFGPPPPPPKPKNTSLVIRFWQWLILIWQSFLALITRPLSRESHKAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10039604 [exp]	0	1
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	1.0	0.8930
AT5G14680			Adenine nucleotide alpha hydro...		Lus10014545 [exp]	3.5	0.8341
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	3.7	0.8394
AT1G66510			AAR2 protein family (.1.2.3)		Lus10009118 [exp]	4.9	0.8235
AT1G07170			PHF5-like protein (.1.2.3)		Lus10018253 [exp]	8.4	0.8048
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	8.5	0.8283
AT3G04780			Protein of unknown function (D...		Lus10001780 [exp]	11.2	0.8285
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10009495 [exp]	14.7	0.7988
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	27.9	0.8084
					Lus10003566 [exp]	28.1	0.7784

Compare expression of checked genes

Lus10039604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.