Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60830 602 / 0 ATARP7 actin-related protein 7 (.1) AT5G09810 208 / 4e-64 ACT2/7, ACT7 actin 7 (.1) AT3G12110 207 / 1e-63 ACT11 actin-11 (.1) AT3G53750 206 / 4e-63 ACT3 actin 3 (.1) AT2G37620 206 / 4e-63 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT1G49240 204 / 1e-62 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 204 / 1e-62 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT5G59370 204 / 2e-62 ACT4 actin 4 (.1.2) AT3G46520 204 / 2e-62 ACT12 actin-12 (.1) AT2G42090 198 / 3e-60 ACT9 actin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029510 [exp] 728 / 0 AT3G60830 587 / 0.0 actin-related protein 7 (.1) Lus10005457 [exp] 210 / 9e-65 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 210 / 9e-65 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 210 / 9e-65 AT3G12110 768 / 0.0 actin-11 (.1) Lus10001694 [exp] 209 / 2e-64 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 209 / 2e-64 AT3G12110 766 / 0.0 actin-11 (.1) Lus10006783 [exp] 209 / 3e-64 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 209 / 3e-64 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 209 / 3e-64 AT5G09810 778 / 0.0 actin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060200 [exp] 633 / 0 AT3G60830 615 / 0.0 actin-related protein 7 (.1) Potri.001G265200 [exp] 630 / 0 AT3G60830 611 / 0.0 actin-related protein 7 (.1) Potri.011G148000 [exp] 216 / 5e-67 AT5G09810 731 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 212 / 2e-65 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 212 / 2e-65 AT5G09810 774 / 0.0 actin 7 (.1) Potri.008G055500 [exp] 211 / 3e-65 AT3G12110 765 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 210 / 8e-65 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 210 / 8e-65 AT3G12110 767 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 210 / 9e-65 AT3G12110 733 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 205 / 6e-63 AT5G09810 769 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10039606 pacid=23165079 polypeptide=Lus10039606 locus=Lus10039606.g ID=Lus10039606.BGIv1.0 annot-version=v1.0 ATGGAGGCTGTTGTGATCGATGCTGGGTCCAAGCTCCTCAAAGCCGGTACCGCCGTCCCGGATCAAGCCCCGCCACTGATAATTCCAACACAAATGAAGC GCATGCTTGAAGATGGATCGACACCTGATAGTCCAATAGTTGAGGATATAACCGTTGACCCAGTTGTTCGAGGTTATGTTAAAGATTGGGATGCTATGGA GGACTTACTGCAATATGTTTTGTACACGGGTCTTGAGTGGGAAGAAGGAAACGAAGGGCAAGTTTTGTTTACTGATCCACTTTCTACACCAAAGGCTGTT AAAGAACAATTAGTCCAACTGATGTTCGAAACGTTTAATGTGTCTGGCTTCTATGCATCTGAACAAGCAGTCTTGTCTCTTTATGCAGTCGGGCGTATAT CTGGATGCACAGTTGATATTGGTCATGGGAAGATAGATATTGCGCCCGTACTTGAAGGTGCTGTCCAGCAGATATCCTCCAAGAGATTTGAAATTGGAGG ACTTGATTTGACAAAGTTACTGGCCCAGGAGTTGGGAAAGTCGAATCCTTCAGTTAATCTCAATAATTCCTATGTTGAGATTTTAAAAGAGAAGTACTCT TGTTGCGCTGAAGATGAGCTTGCTTACAGGAAAACTCAAGAAGCGAATGAGATAGAGGAGCATACACTTCCTGATGGTCAGGTGATAAATGTTGGAAAGG AAAGGTACACTGTCGGAGAGGCTCTATTCCAACCATCCATTTTGGGGCTAGAGGCACATGGGATCGTTGAGCAGCTTGTCCGTTGTATATCCACCGTATC TTCTGATAATCAACGACAGCTGCTGGAAAATACTGTCCTTTGCGGTGGCATAACAGCAATGCCCGGTTTCGAGGAGAGATTTCAGAAAGAAGCTGGATTA TGCTCATCAGCTATCCGGCCTTCACTTGTTAAGGCTCCAGAGTACATGACAGACAGATTATCGGAGTTATCGGCATGGGTGGGAGGTGCTATACTTGCGA AAGTAGTGTTTCCTCAAAATCAGCATGTTACCAAGGGAGATTATGATGAAACTGGCCCATCTGTCGTTCACCGGAAGTGCTTTTAA
AA sequence Show only first row Show all	>Lus10039606 pacid=23165079 polypeptide=Lus10039606 locus=Lus10039606.g ID=Lus10039606.BGIv1.0 annot-version=v1.0 MEAVVIDAGSKLLKAGTAVPDQAPPLIIPTQMKRMLEDGSTPDSPIVEDITVDPVVRGYVKDWDAMEDLLQYVLYTGLEWEEGNEGQVLFTDPLSTPKAV KEQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQQISSKRFEIGGLDLTKLLAQELGKSNPSVNLNNSYVEILKEKYS CCAEDELAYRKTQEANEIEEHTLPDGQVINVGKERYTVGEALFQPSILGLEAHGIVEQLVRCISTVSSDNQRQLLENTVLCGGITAMPGFEERFQKEAGL CSSAIRPSLVKAPEYMTDRLSELSAWVGGAILAKVVFPQNQHVTKGDYDETGPSVVHRKCF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10039606 [exp]	0	1
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10013735 [exp]	1.4	0.9272
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10029510 [exp]	1.7	0.9142
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	1.7	0.9275
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10025693 [exp]	4.5	0.9075
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	4.9	0.8980
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	8.2	0.8895
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	12.6	0.9078
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	17.7	0.8963
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	18.5	0.8651
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	24.1	0.8955

Compare expression of checked genes

Lus10039606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.