Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05170 1754 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G32410 1459 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 1412 / 0 CESA10 cellulose synthase 10 (.1) AT5G17420 1389 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G09870 1351 / 0 CESA5 cellulose synthase 5 (.1) AT5G64740 1340 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1330 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G39350 1321 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT4G18780 1220 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT3G03050 810 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012198 [exp] 1684 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1676 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1493 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1484 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 1343 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1342 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1334 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1281 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007296 [exp] 1221 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060800 [exp] 1814 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.001G266400 [exp] 1805 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.016G054900 [exp] 1701 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1700 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G251900 [exp] 1503 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G029400 [exp] 1502 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G181900 [exp] 1422 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 1414 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.013G019800 [exp] 1410 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1397 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10039607 pacid=23165167 polypeptide=Lus10039607 locus=Lus10039607.g ID=Lus10039607.BGIv1.0 annot-version=v1.0 ATGAAAAATGTTGAAGGGGTGTGCCAGATTTGTGGAGACAGTATTGGTTGCACTGTGAAAGGTGATCTCTTTGTTGCCTGTGATGTTTGTCCGTTTCCAG TGTGTAGGCCATGTTATGAGTATGAGAGGAAGCACGGCAATCAGTCTTGCCCTCAATGCAAAACTAGATACAAGAGACACAAAGGTAGTCCTGTCATCCT TGGTGATAGAGATGAGGACACTGAAACTGGTGACACTGGAAGTGATATCAACTACTCTTCTGAAAAGCAGAACCAAAAACAGAAGATTTCAGAACATATG TTGAGCTGGCGAATTGGACGGGCAGAGGATGCTGGGTCTTCAAGTTCTGATAGAGAAGCCCCTCGTAACCATATTCCTCTTTTAACTAATGGACGAGAGG TATATGGGGATTTTTCTGCTGGATCACCTGAGCCTATGTATATTGCATCTCCTAAACTTGGCAGCGGAAAGCATATGCGTCACCTGCCTTATGCAGCGGA TATCAATCAATCACCTAACATGAGGAGTGCTGAGCAGTCCAGAGAATTTCCTTCTCCAGGATTGGGCAATGTAGCTTGGAAAGAGAGAGTTGATGGCTGG AAGATGAAGCAGGAAAAGAATGCTATTCCTATGAGCTCCAGTCAAGCTCCTTCAGAAAGAGGTGTTGGGGATATTGATGCTAGCACTGACATCCTTGTGG ATGAGTCCCTGCTCAATGATGAAGCACGCCAGCCTTTGTCACGGAAGGTCTCCATTCCGTCTTCTAAGATTAATCCCTACAGGATGGTCATTGTTTTACG GCTTATCATCCTATGCGTTTTCCTGCATTACCGAATTACGAATCCTGTACACAATGCCTTTCCTCTTTGGCTGGTGTCTGTAATATGTGAGATCTGGTTT GCAATATCTTGGATATTGGATCAGTTCCCTAAATGGACACCAATAAACCGTGAGACATATCTCGACAGGCTTGCTTTAAGATATGATCGTGAAGGAGAAC CGTCACAGTTAGCCGCTGTTGATATTTTTGTCAGTACTGTGGACCCAATGAAGGAGCCTCCTATCGTCACAGCAAATACTGTGTTATCTATTCTTGCAGT TGACTACCCAGTTGAAAAGGTCTCATGCTATGTATCTGATGATGGTGCTGCGATGTTGTCATTCGAAGCTTTATCCGAAACTGCTGAGTTTGCAAGGAAA TGGGTGCCCTTCTGCAAGAGATACAGTATTGAGCCACGAGCTCCAGAATGGTACTTCTCACAGAAGATTGACTACTTGAAGGATAAAGTTCAAACATCAT TTGTCAAGGACCGCAGAGCTATGAAGAGAGAATACGAAGAGTTTAAAGTCCGCATTAATGCGCTGGTTTCCAAAGCAACGAAAGTTCCCATAGAAGGATG GATTATGCAAGATGGTACCCCGTGGCCTGGAAATAACACCAGAGACCATCCTGGAATGATTCAGGTTTTCTTAGGCCAAAGTGGAGGTCTAGATGAAGAG GGCAATGAGCTGCCTAGATTAGTTTATGTTTCTCGTGAAAAGCGCCCAAGCCAACCTCACCACAAGAAAGCGGGTGCTATGAATGCTCTTGTTCGTGTAT CAGCTGTGCTAACAAATGGGCCATTCTTGTTGAATCTGGATTGTGATCATTATATAAACAACAGCAAGGCTTTGAGAGAAGCTATGTGTTTCATGATGGA TCCCAACCTTGGGAAACACGTATGCTACGTGCAATTTCCTCAGAGGTTCGATGGTATTGACAAGAACGATCGCTATGCTAATCGAAATACTGTCTTCTTT GACATGAACTTGAGGGGTTTGGATGGCATTCAAGGCCCGGTATACGTGGGTACAGGATGTGTTTTCAACCGAACAGCCTTGTATGGTTATGAACCTCCAT TGAAGCTTAAACGCAAGAAAGAAGGTTTCTTGTCTTCACTTTGTGGAGGATCGTCACGAAAGAAAGGTCTGAAGTTGGGCAAAAAGGGCTCTACCAAGAA CAGATCTGGTAACAATGTTGATCCTACCATTCCAGTTTTCAGCCTGGAAGACATTGAAGAAGGTGTTGAAGGTGCTGGATTCGACGACGAGAAGTCATTG CTCATGTCACAAATGAGCCTTGAAAAGAGGTTTGGCCAGTCAGCTGTTTTTGTTGCGTCTACACTGATGGAGAATGGTGGTGTTCCTGAATTAGCAACAC CAGAAACTCTCCTTAAAGAGGCCATTCATGTCATAAGTTGTGGTTACGAGGACAAAACAGACTGGGGACTTGAGATTGGTTGGATCTACGGTTCTGTTAC AGAAGATATTCTTACTGGGTTCAAGATGCATGCTCGCGGCTGGAGATCGATCTACTGCATGCCTCAGCGCCCAGCATTCAAGGGCTCCGCTCCTATCAAT CTCTCCGATCGTCTGAACCAAGTGCTCCGGTGGGCTTTAGGTTCAGTGGAGATCCTTTTCAGTCGCCATTGTCCAATATGGTATGGCTACGGAGGAAGGC TCAAAGCGCTGGAGAGATTCGCGTATATCAACACCACTATCTATCCAGTTACTGCCATCCCGCTTCTCATGTACTGCACACTCCCAGCTGTCTGTCTCTT CACAAACAGGTTCATCATTCCACAGATCAGTAACCTTGCCAGCATATGGTTCATATCCCTCTTCCTCTCAATATTCGCAACCGGAATCCTGGAAATGAGG TGGAGCGGGGTTGGGATCGACGAGTGGTGGAGAAACGAGCAGTTCTGGGTGATCGGTGGGGTGTCCTCCCACCTGTTTGCAGTATTCCAGGGACTACTCA AAGTCCTTGGCGGCATTGACACAAACTTCACGGTGACATCCAAGGGATCTGATGAGGATGGAGATTTCGCGGAGCTATACTTGTTCAAATGGACGACGCT CCTGATCCCTCCGACCACATTACTGATAATCAACTTAGTAGGTGTGGTGGCGGGGATATCGTATGCGATTAACAGTGGGTACCAGTCGTGGGGGCCGCTG TTTGGGAAGCTGTTCTTTGCATTCTGGGTGATCATCCATTTGTATCCATTCCTGAAAGGTCTGATGGGGAAGCAGAACCGGACACCTACAATCGTGGTGG TGTGGTCGATCCTGCTGGCTTCAATATTCTCGCTGTTGTGGGTCAGAATTGATCCGTTTACTACAAGAGTTACAGGGCCTAAGACTGAGGAATGTGGGAT CAATTGTTAG
AA sequence Show only first row Show all	>Lus10039607 pacid=23165167 polypeptide=Lus10039607 locus=Lus10039607.g ID=Lus10039607.BGIv1.0 annot-version=v1.0 MKNVEGVCQICGDSIGCTVKGDLFVACDVCPFPVCRPCYEYERKHGNQSCPQCKTRYKRHKGSPVILGDRDEDTETGDTGSDINYSSEKQNQKQKISEHM LSWRIGRAEDAGSSSSDREAPRNHIPLLTNGREVYGDFSAGSPEPMYIASPKLGSGKHMRHLPYAADINQSPNMRSAEQSREFPSPGLGNVAWKERVDGW KMKQEKNAIPMSSSQAPSERGVGDIDASTDILVDESLLNDEARQPLSRKVSIPSSKINPYRMVIVLRLIILCVFLHYRITNPVHNAFPLWLVSVICEIWF AISWILDQFPKWTPINRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPMKEPPIVTANTVLSILAVDYPVEKVSCYVSDDGAAMLSFEALSETAEFARK WVPFCKRYSIEPRAPEWYFSQKIDYLKDKVQTSFVKDRRAMKREYEEFKVRINALVSKATKVPIEGWIMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDEE GNELPRLVYVSREKRPSQPHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDKNDRYANRNTVFF DMNLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKLKRKKEGFLSSLCGGSSRKKGLKLGKKGSTKNRSGNNVDPTIPVFSLEDIEEGVEGAGFDDEKSL LMSQMSLEKRFGQSAVFVASTLMENGGVPELATPETLLKEAIHVISCGYEDKTDWGLEIGWIYGSVTEDILTGFKMHARGWRSIYCMPQRPAFKGSAPIN LSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKALERFAYINTTIYPVTAIPLLMYCTLPAVCLFTNRFIIPQISNLASIWFISLFLSIFATGILEMR WSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLGGIDTNFTVTSKGSDEDGDFAELYLFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPL FGKLFFAFWVIIHLYPFLKGLMGKQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPKTEECGINC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10039607 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	1.7	0.9101
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	5.3	0.8943
AT3G47570			Leucine-rich repeat protein ki...		Lus10014500 [exp]	6.2	0.8644
AT2G33360			Protein of unknown function (D...		Lus10014479 [exp]	6.6	0.8631
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023212 [exp]	12.4	0.8701
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	15.1	0.8412
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	17.9	0.8803
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	18.4	0.8776
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	19.9	0.8659
AT3G59110			Protein kinase superfamily pro...		Lus10020747 [exp]	21.8	0.8796

Compare expression of checked genes

Lus10039607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.